Strain Fitness in Shewanella oneidensis MR-1 around SO1221

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,266,485	+	deoB	SO1219	0.32	-0.8
1,266,495	+	deoB	SO1219	0.33	-0.8
1,266,554	+	deoB	SO1219	0.38	-2.6
1,266,706	-	deoB	SO1219	0.51	-0.1
1,266,876	-	deoB	SO1219	0.65	+3.5
1,266,876	-	deoB	SO1219	0.65	+1.7
1,266,912	+	deoB	SO1219	0.67	-0.7
1,267,025	-	deoB	SO1219	0.77	+0.8
1,267,093	-	deoB	SO1219	0.82	+6.1
1,267,139	+	deoB	SO1219	0.86	+0.6
1,267,149	+	deoB	SO1219	0.87	+1.4
1,267,157	-	deoB	SO1219	0.88	+1.0
1,267,157	-	deoB	SO1219	0.88	+2.7
1,267,186	-				+2.0
1,267,346	-				-0.3
1,267,346	-				+1.4
1,267,346	-				+2.1
1,267,346	-				+0.9
1,267,412	+				-0.8
1,267,479	-	deoD-2	SO1221	0.11	+1.9
1,267,573	-	deoD-2	SO1221	0.25	+1.6
1,267,687	-	deoD-2	SO1221	0.41	+0.7
1,267,699	-	deoD-2	SO1221	0.42	+1.9
1,267,724	+	deoD-2	SO1221	0.46	+3.6
1,267,732	-	deoD-2	SO1221	0.47	+3.7
1,267,807	-	deoD-2	SO1221	0.58	+0.6
1,267,965	+	deoD-2	SO1221	0.80	-0.5
1,268,038	+				+2.1
1,268,105	+				-1.8
1,268,113	-				+0.0
1,268,116	+				+1.1
1,268,116	+				+1.8
1,268,116	+				+1.6
1,268,116	+				+1.5
1,268,116	+				+0.6
1,268,124	-				+2.1
1,268,124	-				+3.1
1,268,124	-				+1.9
1,268,124	-				-0.7
1,268,124	-				-0.3
1,268,124	-				-1.1
1,268,124	-				-0.6
1,268,124	-				+0.2
1,268,124	-				-0.3
1,268,124	-				+0.4
1,268,124	-				+0.3
1,268,124	-				-0.9
1,268,351	-				+0.2
1,268,454	+		SO1222	0.15	-1.2
1,268,467	-		SO1222	0.16	+0.3
1,268,501	+		SO1222	0.18	+1.4
1,268,503	+		SO1222	0.19	-1.8
1,268,509	-		SO1222	0.19	-1.0
1,268,600	-		SO1222	0.26	-0.9
1,268,605	+		SO1222	0.27	+0.4
1,268,701	-		SO1222	0.35	-0.1
1,268,812	+		SO1222	0.44	+0.1
1,268,835	+		SO1222	0.46	+2.0
1,268,843	-		SO1222	0.46	+0.3
1,268,998	-		SO1222	0.59	-0.3