Strain Fitness in Shewanella oneidensis MR-1 around SO1145

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,187,880	+		SO1144	0.53	-0.2
1,187,903	-		SO1144	0.55	-0.9
1,188,010	+		SO1144	0.65	-0.0
1,188,166	-		SO1144	0.79	-0.5
1,188,212	+		SO1144	0.83	+0.2
1,188,220	-		SO1144	0.84	-1.8
1,188,237	+		SO1144	0.85	+1.4
1,188,258	+		SO1144	0.87	-0.6
1,188,393	+				+0.7
1,188,444	-				-0.8
1,188,459	+				-0.8
1,188,470	+				+0.6
1,188,637	+				-1.7
1,188,647	+				-2.6
1,188,670	-				-1.8
1,188,791	+				-3.2
1,188,802	-				-3.4
1,188,807	-				-2.5
1,188,971	-	mgtE-1	SO1145	0.19	-3.7
1,189,016	+	mgtE-1	SO1145	0.22	-0.7
1,189,047	+	mgtE-1	SO1145	0.24	+0.2
1,189,055	-	mgtE-1	SO1145	0.25	-2.0
1,189,060	-	mgtE-1	SO1145	0.25	-3.8
1,189,068	-	mgtE-1	SO1145	0.26	-0.7
1,189,098	+	mgtE-1	SO1145	0.28	-3.2
1,189,227	+	mgtE-1	SO1145	0.37	-3.1
1,189,413	-	mgtE-1	SO1145	0.51	-1.2
1,189,420	-	mgtE-1	SO1145	0.51	-1.9
1,189,522	+	mgtE-1	SO1145	0.59	-2.1
1,189,525	-	mgtE-1	SO1145	0.59	-3.9
1,189,562	+	mgtE-1	SO1145	0.62	-2.0
1,189,565	-	mgtE-1	SO1145	0.62	+0.2
1,189,635	+	mgtE-1	SO1145	0.67	-2.7
1,189,645	+	mgtE-1	SO1145	0.68	-3.0
1,189,646	+	mgtE-1	SO1145	0.68	-1.5
1,189,653	-	mgtE-1	SO1145	0.68	-1.9
1,189,693	-	mgtE-1	SO1145	0.71	-4.1
1,189,724	-	mgtE-1	SO1145	0.73	-2.7
1,189,769	-	mgtE-1	SO1145	0.77	-3.0
1,189,771	+	mgtE-1	SO1145	0.77	-2.2
1,189,779	-	mgtE-1	SO1145	0.77	-3.6
1,189,780	-	mgtE-1	SO1145	0.77	-3.1
1,189,783	-	mgtE-1	SO1145	0.78	-3.3
1,189,841	+	mgtE-1	SO1145	0.82	-0.5
1,189,942	+	mgtE-1	SO1145	0.89	-2.7
1,189,950	-	mgtE-1	SO1145	0.90	-3.4
1,189,952	+				-0.7
1,189,952	+				-4.5
1,189,958	-				+0.2
1,190,013	+				-2.5
1,190,013	+				-2.2
1,190,013	+				-2.6
1,190,078	+				-2.4
1,190,142	+				-2.2
1,190,144	+				-2.6
1,190,226	+		SO1146	0.17	-2.8
1,190,234	-		SO1146	0.18	-2.0
1,190,269	+		SO1146	0.23	-2.4
1,190,335	+		SO1146	0.33	-3.6
1,190,343	-		SO1146	0.34	-4.0
1,190,422	+		SO1146	0.46	-4.3
1,190,430	-		SO1146	0.47	-2.4
1,190,593	-		SO1146	0.71	-2.2
1,190,626	-		SO1146	0.75	-2.8
1,190,643	-		SO1146	0.78	-4.1
1,190,950	+				-2.9
1,190,985	-				-2.8
1,190,985	-				-3.0
1,190,985	-				-2.6
1,191,015	+				-2.8
1,191,023	-				-2.2
1,191,041	+				-2.2