Strain Fitness in Shewanella oneidensis MR-1 around SO1144

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,186,346	+		SO1143	0.13	-0.1
1,186,482	+		SO1143	0.31	-1.8
1,186,490	-		SO1143	0.32	-0.5
1,186,490	-		SO1143	0.32	+2.3
1,186,534	+		SO1143	0.38	-1.7
1,186,544	+		SO1143	0.39	+1.1
1,186,550	-		SO1143	0.40	-0.2
1,186,550	-		SO1143	0.40	-0.7
1,186,552	-		SO1143	0.40	+0.2
1,186,552	-		SO1143	0.40	+0.0
1,186,552	-		SO1143	0.40	-1.1
1,186,622	+		SO1143	0.49	+0.7
1,186,622	+		SO1143	0.49	+0.3
1,186,622	+		SO1143	0.49	+0.6
1,186,622	+		SO1143	0.49	+0.8
1,186,622	+		SO1143	0.49	+1.3
1,186,622	+		SO1143	0.49	+0.7
1,186,622	+		SO1143	0.49	+0.6
1,186,622	+		SO1143	0.49	+1.5
1,186,622	+		SO1143	0.49	-2.7
1,186,630	-		SO1143	0.50	-0.7
1,186,630	-		SO1143	0.50	+0.9
1,186,630	-		SO1143	0.50	-0.5
1,186,727	-		SO1143	0.63	+1.0
1,186,769	+		SO1143	0.68	+0.2
1,186,769	+		SO1143	0.68	-2.8
1,186,769	+		SO1143	0.68	+1.3
1,186,769	+		SO1143	0.68	+0.6
1,186,769	+		SO1143	0.68	-0.7
1,186,769	+		SO1143	0.68	+1.6
1,186,769	+		SO1143	0.68	+0.9
1,186,769	+		SO1143	0.68	-1.0
1,186,769	+		SO1143	0.68	+1.1
1,186,777	-		SO1143	0.70	-1.9
1,186,777	-		SO1143	0.70	-0.4
1,186,777	-		SO1143	0.70	-0.6
1,186,777	-		SO1143	0.70	+0.2
1,186,777	-		SO1143	0.70	-1.0
1,186,777	-		SO1143	0.70	+1.5
1,186,857	+		SO1143	0.80	-1.4
1,186,914	-		SO1143	0.87	-1.5
1,187,045	+				-2.2
1,187,045	+				+2.3
1,187,045	+				-0.9
1,187,045	+				+0.4
1,187,045	+				-0.1
1,187,045	+				+0.1
1,187,053	-				-1.2
1,187,053	-				+0.7
1,187,053	-				-0.0
1,187,074	-				-0.0
1,187,090	-				-1.0
1,187,100	+				+1.0
1,187,100	+				-1.3
1,187,108	-				+0.3
1,187,108	-				-1.7
1,187,160	-				+0.9
1,187,226	+				-0.3
1,187,229	-				+0.9
1,187,232	+				+1.3
1,187,234	-				+2.5
1,187,234	-				+0.4
1,187,235	-				+0.2
1,187,292	-				-0.2
1,187,306	-				+0.8
1,187,441	-		SO1144	0.12	+0.9
1,187,610	+		SO1144	0.28	+0.8
1,187,610	+		SO1144	0.28	+2.9
1,187,610	-		SO1144	0.28	-0.3
1,187,618	-		SO1144	0.29	-0.1
1,187,880	+		SO1144	0.53	-0.2
1,187,903	-		SO1144	0.55	-0.9
1,188,010	+		SO1144	0.65	-0.0
1,188,166	-		SO1144	0.79	-0.5
1,188,212	+		SO1144	0.83	+0.2
1,188,220	-		SO1144	0.84	-1.8
1,188,237	+		SO1144	0.85	+1.4
1,188,258	+		SO1144	0.87	-0.6
1,188,393	+				+0.7
1,188,444	-				-0.8
1,188,459	+				-0.8
1,188,470	+				+0.6
1,188,637	+				-1.7
1,188,647	+				-2.6
1,188,670	-				-1.8
1,188,791	+				-3.2
1,188,802	-				-3.4
1,188,807	-				-2.5
1,188,971	-	mgtE-1	SO1145	0.19	-3.7
1,189,016	+	mgtE-1	SO1145	0.22	-0.7
1,189,047	+	mgtE-1	SO1145	0.24	+0.2
1,189,055	-	mgtE-1	SO1145	0.25	-2.0
1,189,060	-	mgtE-1	SO1145	0.25	-3.8
1,189,068	-	mgtE-1	SO1145	0.26	-0.7
1,189,098	+	mgtE-1	SO1145	0.28	-3.2
1,189,227	+	mgtE-1	SO1145	0.37	-3.1