Strain Fitness in Shewanella oneidensis MR-1 around SO1141

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,180,761	+				+1.3
1,180,761	+				+1.5
1,181,579	+				+0.8
1,182,088	+	carA	SO1141	0.28	-2.9
1,182,287	-	carA	SO1141	0.46	-0.3
1,182,287	-	carA	SO1141	0.46	-0.1
1,182,407	+	carA	SO1141	0.56	-1.3
1,182,407	+	carA	SO1141	0.56	-1.1
1,182,647	-	carA	SO1141	0.77	-2.1
1,182,652	-	carA	SO1141	0.77	-2.7
1,182,740	+	carA	SO1141	0.85	-2.9
1,182,785	+	carA	SO1141	0.88	-1.1
1,182,785	+	carA	SO1141	0.88	-1.5
1,182,793	-	carA	SO1141	0.89	-2.9
1,182,844	+				-0.9
1,182,861	+				-2.3
1,182,954	-				-0.8
1,183,006	+				-4.2
1,183,036	+				-2.1
1,183,097	-				-0.3
1,183,097	-				+2.5
1,183,097	-				+0.2
1,183,097	-				+0.5
1,183,228	+				-2.8
1,183,236	-				-0.1
1,183,336	+	carB	SO1142	0.12	-2.7
1,183,348	+	carB	SO1142	0.12	-1.8
1,183,371	-	carB	SO1142	0.13	-2.7
1,183,402	+	carB	SO1142	0.14	+0.9
1,183,769	-	carB	SO1142	0.26	-1.0
1,183,855	-	carB	SO1142	0.28	-0.1
1,183,855	-	carB	SO1142	0.28	-0.5