Strain Fitness in Shewanella oneidensis MR-1 around SO1122

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,164,233	-	proB	SO1121	0.19	-0.8
1,164,268	-	proB	SO1121	0.22	-2.4
1,164,284	-	proB	SO1121	0.24	+1.7
1,164,413	+	proB	SO1121	0.35	-2.4
1,164,413	+	proB	SO1121	0.35	+0.4
1,164,512	+	proB	SO1121	0.44	-0.7
1,164,638	-	proB	SO1121	0.55	+2.2
1,164,713	+	proB	SO1121	0.62	+0.4
1,164,798	-	proB	SO1121	0.70	+2.3
1,164,821	+	proB	SO1121	0.72	-0.2
1,164,853	+	proB	SO1121	0.75	+1.3
1,164,860	+	proB	SO1121	0.75	+0.6
1,164,868	-	proB	SO1121	0.76	-1.8
1,164,868	-	proB	SO1121	0.76	-1.6
1,164,893	-	proB	SO1121	0.78	-1.0
1,164,936	-	proB	SO1121	0.82	+0.6
1,165,017	-	proB	SO1121	0.89	+0.5
1,165,035	-				+1.1
1,165,089	+				+0.6
1,165,127	-				+1.8
1,165,210	+				-0.1
1,165,218	-				+0.5
1,165,224	-				+0.0
1,165,226	+				+0.5
1,165,234	-				-0.7
1,165,478	+	proA	SO1122	0.26	+0.7
1,165,478	+	proA	SO1122	0.26	+0.0
1,165,478	+	proA	SO1122	0.26	-0.0
1,165,478	+	proA	SO1122	0.26	+0.8
1,165,478	+	proA	SO1122	0.26	-0.6
1,165,478	+	proA	SO1122	0.26	+0.6
1,165,486	-	proA	SO1122	0.26	-0.1
1,165,486	-	proA	SO1122	0.26	-0.6
1,165,486	-	proA	SO1122	0.26	+0.4
1,165,486	-	proA	SO1122	0.26	-0.5
1,165,486	-	proA	SO1122	0.26	+0.3
1,165,655	+	proA	SO1122	0.40	-0.1
1,165,666	+	proA	SO1122	0.40	-0.3
1,165,674	-	proA	SO1122	0.41	+0.4
1,165,674	-	proA	SO1122	0.41	-1.2
1,165,674	-	proA	SO1122	0.41	-0.1
1,165,680	-	proA	SO1122	0.41	+0.7
1,165,734	+	proA	SO1122	0.46	+1.7
1,165,778	+	proA	SO1122	0.49	-1.6
1,165,794	+	proA	SO1122	0.50	+0.3
1,165,824	-	proA	SO1122	0.53	-0.2
1,165,851	+	proA	SO1122	0.55	+0.7
1,165,868	-	proA	SO1122	0.56	+2.5
1,165,868	-	proA	SO1122	0.56	+1.6
1,165,919	+	proA	SO1122	0.60	-0.2
1,165,937	-	proA	SO1122	0.62	-0.7
1,166,007	+	proA	SO1122	0.67	-0.0
1,166,007	-	proA	SO1122	0.67	-1.5
1,166,009	+	proA	SO1122	0.67	-1.0
1,166,009	+	proA	SO1122	0.67	+1.4
1,166,009	+	proA	SO1122	0.67	+0.3
1,166,009	+	proA	SO1122	0.67	+1.2
1,166,009	+	proA	SO1122	0.67	-0.3
1,166,009	+	proA	SO1122	0.67	-2.5
1,166,009	+	proA	SO1122	0.67	-1.5
1,166,017	-	proA	SO1122	0.68	+2.1
1,166,017	-	proA	SO1122	0.68	+0.4
1,166,017	-	proA	SO1122	0.68	-2.4
1,166,017	-	proA	SO1122	0.68	+0.2
1,166,017	-	proA	SO1122	0.68	-2.4
1,166,017	-	proA	SO1122	0.68	-0.6
1,166,017	-	proA	SO1122	0.68	+0.1
1,166,042	+	proA	SO1122	0.70	+1.5
1,166,050	-	proA	SO1122	0.70	+0.2
1,166,087	-	proA	SO1122	0.73	-1.4
1,166,097	-	proA	SO1122	0.74	+1.8
1,166,124	-	proA	SO1122	0.76	-1.3
1,166,152	-	proA	SO1122	0.78	-0.6
1,166,255	-	proA	SO1122	0.86	+1.0
1,166,263	+	proA	SO1122	0.87	-1.0
1,166,271	-	proA	SO1122	0.88	+0.5
1,166,415	-				+0.2
1,166,529	-		SO1123	0.13	+0.7
1,166,608	+		SO1123	0.39	+0.5
1,166,683	-		SO1123	0.64	-1.2
1,166,752	-		SO1123	0.87	-0.3
1,166,806	-				-0.2
1,166,806	-				+0.2
1,166,895	+				+0.8
1,166,895	+				+2.6
1,166,978	-		SO1124	0.16	-0.4
1,167,111	-		SO1124	0.44	-1.9
1,167,240	-		SO1124	0.71	+0.9
1,167,289	+		SO1124	0.81	-0.4
1,167,379	+				-0.0
1,167,387	-				+0.5
1,167,387	-				-0.2
1,167,407	+				-1.5