Strain Fitness in Shewanella oneidensis MR-1 around SO1035

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,073,463	-		SO1034	0.44	-1.4
1,073,544	+		SO1034	0.51	-1.6
1,073,784	+		SO1034	0.72	-0.1
1,073,784	+		SO1034	0.72	+0.2
1,073,784	+		SO1034	0.72	-0.3
1,073,791	+		SO1034	0.73	-2.0
1,073,792	-		SO1034	0.73	-1.6
1,073,792	-		SO1034	0.73	-1.3
1,073,792	-		SO1034	0.73	-1.7
1,073,792	-		SO1034	0.73	-0.1
1,073,792	-		SO1034	0.73	-0.5
1,073,799	-		SO1034	0.73	+0.9
1,073,834	+		SO1034	0.76	-0.9
1,073,900	-		SO1034	0.82	-1.2
1,073,905	+		SO1034	0.83	+0.6
1,073,963	-		SO1034	0.88	+0.3
1,074,016	+				-0.1
1,074,093	-				-0.1
1,074,121	-				+0.5
1,074,419	-				+0.1
1,074,424	+				-1.1
1,074,470	-				-1.8
1,074,474	-				-0.1
1,074,533	+	cobT	SO1035	0.11	+0.8
1,074,581	-	cobT	SO1035	0.16	-1.0
1,074,744	-	cobT	SO1035	0.31	+1.2
1,074,759	+	cobT	SO1035	0.32	-0.4
1,074,774	-	cobT	SO1035	0.34	-0.8
1,075,054	+	cobT	SO1035	0.60	-0.2
1,075,159	+	cobT	SO1035	0.70	+2.4
1,075,167	-	cobT	SO1035	0.71	-3.6
1,075,257	-	cobT	SO1035	0.80	-1.5
1,075,328	+	cobT	SO1035	0.87	+1.2
1,075,362	+	cobT	SO1035	0.90	+0.5
1,075,459	-				-2.4
1,075,461	+				-0.9
1,075,464	+				+1.6
1,075,469	-				-3.6
1,075,694	-	cobS	SO1036	0.15	-2.5
1,075,742	-	cobS	SO1036	0.21	-2.0
1,075,849	+	cobS	SO1036	0.35	-3.9
1,075,884	-	cobS	SO1036	0.39	-1.5
1,075,885	+	cobS	SO1036	0.39	-3.2
1,076,038	+	cobS	SO1036	0.59	-1.5
1,076,071	-	cobS	SO1036	0.63	-0.3
1,076,086	-	cobS	SO1036	0.65	-1.3
1,076,168	+	cobS	SO1036	0.75	-3.7
1,076,230	+	cobS	SO1036	0.83	-1.6
1,076,248	-	cobS	SO1036	0.85	-2.0
1,076,330	+				-0.7
1,076,373	+				-2.0
1,076,463	-	cobU	SO1037	0.17	-1.9