Strain Fitness in Shewanella oneidensis MR-1 around SO1033

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,071,280	+		SO1031	0.70	-0.7
1,071,317	+		SO1031	0.75	+0.7
1,071,419	-		SO1031	0.89	+1.2
1,071,460	+				+1.5
1,071,586	-				+1.6
1,071,670	+				-0.7
1,071,678	-				+0.3
1,071,691	-				-0.5
1,071,839	+				-0.0
1,071,839	+				-0.2
1,071,847	-				-1.2
1,071,847	-				-0.3
1,071,861	+				+0.3
1,071,874	+				+1.5
1,071,906	+				-1.1
1,071,929	-				+1.1
1,071,988	-				-0.3
1,072,003	-				-0.2
1,072,062	+				+0.1
1,072,062	+				+0.8
1,072,062	+				-0.5
1,072,070	-				-0.8
1,072,070	-				-2.0
1,072,070	-				-1.1
1,072,233	-		SO1033	0.15	+0.6
1,072,307	-		SO1033	0.23	+0.8
1,072,324	+		SO1033	0.25	-0.8
1,072,331	+		SO1033	0.26	-1.0
1,072,378	-		SO1033	0.31	-0.5
1,072,382	+		SO1033	0.32	-0.7
1,072,710	+		SO1033	0.70	+0.7
1,072,779	-		SO1033	0.78	-0.7
1,072,819	+		SO1033	0.83	-0.4
1,072,837	-		SO1033	0.85	+1.7
1,072,914	-				-0.8
1,072,914	-				-1.7
1,072,980	-				+0.6
1,072,980	-				-0.6
1,072,980	-				-1.3
1,072,980	-				-0.2
1,072,980	-				-0.9
1,073,034	+				+0.1
1,073,034	+				-1.1
1,073,056	-				-1.4
1,073,205	+		SO1034	0.21	-2.4
1,073,213	-		SO1034	0.22	-1.6
1,073,355	-		SO1034	0.34	-0.3
1,073,463	-		SO1034	0.44	-1.4
1,073,544	+		SO1034	0.51	-1.6
1,073,784	+		SO1034	0.72	-0.1
1,073,784	+		SO1034	0.72	+0.2
1,073,784	+		SO1034	0.72	-0.3
1,073,791	+		SO1034	0.73	-2.0
1,073,792	-		SO1034	0.73	-1.6
1,073,792	-		SO1034	0.73	-1.3
1,073,792	-		SO1034	0.73	-1.7
1,073,792	-		SO1034	0.73	-0.1
1,073,792	-		SO1034	0.73	-0.5
1,073,799	-		SO1034	0.73	+0.9
1,073,834	+		SO1034	0.76	-0.9
1,073,900	-		SO1034	0.82	-1.2
1,073,905	+		SO1034	0.83	+0.6
1,073,963	-		SO1034	0.88	+0.3