Strain Fitness in Shewanella oneidensis MR-1 around SO1014

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,050,114	+				-0.5
1,050,114	+				-1.1
1,050,122	-				+0.4
1,050,133	+				-0.6
1,050,178	-				+1.2
1,050,183	-				+1.2
1,050,261	-	nuoK	SO1012	0.11	-0.3
1,050,285	-	nuoK	SO1012	0.18	+0.2
1,050,315	-	nuoK	SO1012	0.28	-1.5
1,050,371	-	nuoK	SO1012	0.46	-2.3
1,050,459	+	nuoK	SO1012	0.75	-0.6
1,050,467	-	nuoK	SO1012	0.77	-1.1
1,050,481	+	nuoK	SO1012	0.82	-3.0
1,050,481	+	nuoK	SO1012	0.82	-1.1
1,050,503	+	nuoK	SO1012	0.89	+0.6
1,050,503	+	nuoK	SO1012	0.89	+2.1
1,050,511	-				-0.4
1,050,543	+				-0.0
1,050,587	-				-1.2
1,050,589	+	nuoJ	SO1013	0.10	-1.6
1,050,605	-	nuoJ	SO1013	0.13	-1.1
1,050,696	+	nuoJ	SO1013	0.30	+0.7
1,050,706	+	nuoJ	SO1013	0.31	-0.2
1,050,706	+	nuoJ	SO1013	0.31	-3.4
1,050,714	-	nuoJ	SO1013	0.33	-1.9
1,051,006	+	nuoJ	SO1013	0.86	-2.4
1,051,155	-	nuoI	SO1014	0.11	-1.7
1,051,318	+	nuoI	SO1014	0.41	+0.0
1,051,446	-	nuoI	SO1014	0.65	-2.8
1,051,454	-	nuoI	SO1014	0.66	+0.7
1,051,485	+	nuoI	SO1014	0.72	-1.6
1,051,485	+	nuoI	SO1014	0.72	-2.6
1,051,493	-	nuoI	SO1014	0.73	-2.0
1,051,611	+				+0.5
1,051,677	+				+1.5
1,051,735	-				-0.7
1,051,746	-	nuoH	SO1015	0.10	-1.0
1,051,786	+	nuoH	SO1015	0.14	+1.8
1,051,786	+	nuoH	SO1015	0.14	-1.2
1,051,815	-	nuoH	SO1015	0.17	-0.9
1,051,869	-	nuoH	SO1015	0.23	-1.7
1,051,974	+	nuoH	SO1015	0.34	-1.3
1,051,996	+	nuoH	SO1015	0.36	+0.2
1,052,063	+	nuoH	SO1015	0.43	+0.5
1,052,063	+	nuoH	SO1015	0.43	-1.1
1,052,073	+	nuoH	SO1015	0.44	+0.3
1,052,165	+	nuoH	SO1015	0.54	+1.0
1,052,165	+	nuoH	SO1015	0.54	+0.4
1,052,165	+	nuoH	SO1015	0.54	+2.5
1,052,261	+	nuoH	SO1015	0.63	-1.9
1,052,268	+	nuoH	SO1015	0.64	-1.8
1,052,268	+	nuoH	SO1015	0.64	-2.0
1,052,403	+	nuoH	SO1015	0.78	+0.7