Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt srmB and SO0948 are separated by 278 nucleotides SO0948 and brnQ are separated by 611 nucleotides
SO0947: srmB - ATP-dependent RNA helicase SrmB (NCBI ptt file), at 982,197 to 983,459
srmB
SO0948: SO0948 - conserved hypothetical protein (NCBI ptt file), at 983,738 to 984,400
SO0948
SO0949: brnQ - branched-chain amino acid transport system II carrier protein BrnQ (NCBI ptt file), at 985,012 to 986,400
brnQ
Position (kb) 983
984
985 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 982.755 kb on - strand, within srmB at 982.762 kb on + strand, within srmB at 982.890 kb on + strand, within srmB at 982.900 kb on - strand, within srmB at 982.900 kb on - strand, within srmB at 982.929 kb on + strand, within srmB at 982.929 kb on + strand, within srmB at 982.937 kb on - strand, within srmB at 982.959 kb on - strand, within srmB at 982.986 kb on + strand, within srmB at 982.994 kb on - strand, within srmB at 983.071 kb on + strand, within srmB at 983.089 kb on + strand, within srmB at 983.097 kb on - strand, within srmB at 983.109 kb on + strand, within srmB at 983.117 kb on - strand, within srmB at 983.132 kb on - strand, within srmB at 983.238 kb on + strand, within srmB at 983.238 kb on + strand, within srmB at 983.246 kb on - strand, within srmB at 983.348 kb on + strand at 983.356 kb on - strand at 983.356 kb on - strand at 983.356 kb on - strand at 983.364 kb on - strand at 983.386 kb on - strand at 983.397 kb on - strand at 983.397 kb on - strand at 983.499 kb on + strand at 983.507 kb on - strand at 983.507 kb on - strand at 983.507 kb on - strand at 983.507 kb on - strand at 983.560 kb on - strand at 983.598 kb on - strand at 983.717 kb on - strand at 983.760 kb on + strand at 983.767 kb on + strand at 983.782 kb on - strand at 983.792 kb on - strand at 983.866 kb on - strand, within SO0948 at 983.868 kb on - strand, within SO0948 at 983.877 kb on + strand, within SO0948 at 983.900 kb on - strand, within SO0948 at 983.932 kb on + strand, within SO0948 at 983.932 kb on + strand, within SO0948 at 983.932 kb on + strand, within SO0948 at 983.932 kb on + strand, within SO0948 at 983.940 kb on - strand, within SO0948 at 983.940 kb on - strand, within SO0948 at 983.940 kb on - strand, within SO0948 at 983.974 kb on + strand, within SO0948 at 983.980 kb on + strand, within SO0948 at 983.982 kb on - strand, within SO0948 at 983.990 kb on + strand, within SO0948 at 983.990 kb on + strand, within SO0948 at 983.990 kb on + strand, within SO0948 at 983.990 kb on + strand, within SO0948 at 983.998 kb on - strand, within SO0948 at 984.013 kb on - strand, within SO0948 at 984.045 kb on + strand, within SO0948 at 984.181 kb on + strand, within SO0948 at 984.181 kb on + strand, within SO0948 at 984.189 kb on - strand, within SO0948 at 984.189 kb on - strand, within SO0948 at 984.195 kb on - strand, within SO0948 at 984.195 kb on - strand, within SO0948 at 984.210 kb on - strand, within SO0948 at 984.229 kb on - strand, within SO0948 at 984.243 kb on + strand, within SO0948 at 984.259 kb on + strand, within SO0948 at 984.274 kb on + strand, within SO0948 at 984.279 kb on + strand, within SO0948 at 984.282 kb on - strand, within SO0948 at 984.287 kb on - strand, within SO0948 at 984.319 kb on - strand, within SO0948 at 984.345 kb on + strand at 984.345 kb on + strand at 984.345 kb on + strand at 984.345 kb on + strand at 984.345 kb on + strand at 984.353 kb on - strand at 984.353 kb on - strand at 984.355 kb on + strand at 984.391 kb on - strand at 984.395 kb on - strand at 984.415 kb on - strand at 984.430 kb on + strand at 984.438 kb on - strand at 984.455 kb on - strand at 984.629 kb on - strand at 985.153 kb on + strand, within brnQ at 985.161 kb on - strand, within brnQ at 985.167 kb on - strand, within brnQ at 985.202 kb on - strand, within brnQ at 985.202 kb on - strand, within brnQ at 985.203 kb on - strand, within brnQ at 985.206 kb on + strand, within brnQ at 985.297 kb on + strand, within brnQ at 985.327 kb on - strand, within brnQ at 985.329 kb on - strand, within brnQ at 985.329 kb on - strand, within brnQ
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 982,755 - srmB SO0947 0.44 -2.7 982,762 + srmB SO0947 0.45 +0.3 982,890 + srmB SO0947 0.55 -1.5 982,900 - srmB SO0947 0.56 -1.2 982,900 - srmB SO0947 0.56 -1.4 982,929 + srmB SO0947 0.58 -2.0 982,929 + srmB SO0947 0.58 +0.6 982,937 - srmB SO0947 0.59 -0.5 982,959 - srmB SO0947 0.60 -2.1 982,986 + srmB SO0947 0.62 -0.1 982,994 - srmB SO0947 0.63 -2.2 983,071 + srmB SO0947 0.69 -0.9 983,089 + srmB SO0947 0.71 -1.8 983,097 - srmB SO0947 0.71 -0.4 983,109 + srmB SO0947 0.72 -2.5 983,117 - srmB SO0947 0.73 -1.9 983,132 - srmB SO0947 0.74 -1.7 983,238 + srmB SO0947 0.82 -1.1 983,238 + srmB SO0947 0.82 -3.7 983,246 - srmB SO0947 0.83 -0.7 983,348 + -1.8 983,356 - -0.9 983,356 - -0.4 983,356 - -1.6 983,364 - +1.5 983,386 - -2.7 983,397 - -1.6 983,397 - -3.2 983,499 + -0.9 983,507 - -1.9 983,507 - +0.5 983,507 - +0.5 983,507 - -2.4 983,560 - +0.1 983,598 - +0.3 983,717 - -0.0 983,760 + +0.5 983,767 + +0.7 983,782 - -1.9 983,792 - -0.4 983,866 - SO0948 0.19 +1.1 983,868 - SO0948 0.20 +1.3 983,877 + SO0948 0.21 +0.9 983,900 - SO0948 0.24 +0.5 983,932 + SO0948 0.29 +1.3 983,932 + SO0948 0.29 +2.2 983,932 + SO0948 0.29 +1.4 983,932 + SO0948 0.29 +0.9 983,940 - SO0948 0.30 +0.5 983,940 - SO0948 0.30 +0.1 983,940 - SO0948 0.30 -0.4 983,974 + SO0948 0.36 -1.2 983,980 + SO0948 0.37 +1.8 983,982 - SO0948 0.37 +1.3 983,990 + SO0948 0.38 -1.3 983,990 + SO0948 0.38 -1.1 983,990 + SO0948 0.38 +0.1 983,990 + SO0948 0.38 +0.5 983,998 - SO0948 0.39 +0.9 984,013 - SO0948 0.41 -0.3 984,045 + SO0948 0.46 +2.7 984,181 + SO0948 0.67 +1.4 984,181 + SO0948 0.67 +1.1 984,189 - SO0948 0.68 +0.1 984,189 - SO0948 0.68 +0.5 984,195 - SO0948 0.69 -0.3 984,195 - SO0948 0.69 -1.6 984,210 - SO0948 0.71 -0.3 984,229 - SO0948 0.74 -1.8 984,243 + SO0948 0.76 +0.0 984,259 + SO0948 0.79 -2.4 984,274 + SO0948 0.81 -1.8 984,279 + SO0948 0.82 +1.0 984,282 - SO0948 0.82 +0.9 984,287 - SO0948 0.83 -1.1 984,319 - SO0948 0.88 -1.4 984,345 + -1.1 984,345 + +0.3 984,345 + -0.6 984,345 + -0.1 984,345 + +0.5 984,353 - -1.7 984,353 - +0.1 984,355 + -0.4 984,391 - -0.1 984,395 - +0.4 984,415 - -0.9 984,430 + -0.5 984,438 - +0.7 984,455 - -0.5 984,629 - -1.5 985,153 + brnQ SO0949 0.10 +0.1 985,161 - brnQ SO0949 0.11 +2.0 985,167 - brnQ SO0949 0.11 -0.1 985,202 - brnQ SO0949 0.14 +3.5 985,202 - brnQ SO0949 0.14 +1.7 985,203 - brnQ SO0949 0.14 +0.8 985,206 + brnQ SO0949 0.14 +1.0 985,297 + brnQ SO0949 0.21 +1.7 985,327 - brnQ SO0949 0.23 +1.9 985,329 - brnQ SO0949 0.23 +2.9 985,329 - brnQ SO0949 0.23 +0.0
Or see this region's nucleotide sequence