Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0900 and nqrA-1 are separated by 453 nucleotides nqrA-1 and nqrB-1 overlap by 1 nucleotides
SO0900: SO0900 - oxidoreductase, aldo/keto reductase family (NCBI ptt file), at 927,436 to 928,476
SO0900
SO0902: nqrA-1 - NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit (NCBI ptt file), at 928,930 to 930,300
nqrA-1
SO0903: nqrB-1 - NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB (NCBI ptt file), at 930,300 to 931,532
nqrB-1
Position (kb) 928
929
930
931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 927.999 kb on - strand, within SO0900 at 928.038 kb on - strand, within SO0900 at 928.154 kb on - strand, within SO0900 at 928.156 kb on + strand, within SO0900 at 928.316 kb on + strand, within SO0900 at 928.316 kb on + strand, within SO0900 at 928.316 kb on + strand, within SO0900 at 928.324 kb on - strand, within SO0900 at 928.324 kb on - strand, within SO0900 at 928.324 kb on - strand, within SO0900 at 928.331 kb on + strand, within SO0900 at 928.382 kb on - strand at 928.505 kb on - strand at 928.537 kb on + strand at 928.647 kb on + strand at 928.994 kb on + strand at 928.994 kb on + strand at 928.994 kb on + strand at 928.994 kb on + strand at 929.002 kb on - strand at 929.002 kb on - strand at 929.002 kb on - strand at 929.053 kb on + strand at 929.082 kb on + strand, within nqrA-1 at 929.216 kb on - strand, within nqrA-1 at 929.251 kb on + strand, within nqrA-1 at 929.318 kb on - strand, within nqrA-1 at 929.324 kb on + strand, within nqrA-1 at 929.331 kb on + strand, within nqrA-1 at 929.336 kb on + strand, within nqrA-1 at 929.339 kb on - strand, within nqrA-1 at 929.339 kb on - strand, within nqrA-1 at 929.458 kb on + strand, within nqrA-1 at 929.466 kb on - strand, within nqrA-1 at 929.545 kb on + strand, within nqrA-1 at 929.553 kb on - strand, within nqrA-1 at 929.553 kb on - strand, within nqrA-1 at 929.570 kb on + strand, within nqrA-1 at 929.603 kb on - strand, within nqrA-1 at 929.616 kb on - strand, within nqrA-1 at 929.616 kb on - strand, within nqrA-1 at 929.616 kb on - strand, within nqrA-1 at 929.649 kb on - strand, within nqrA-1 at 929.649 kb on - strand, within nqrA-1 at 929.706 kb on + strand, within nqrA-1 at 929.714 kb on - strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.753 kb on + strand, within nqrA-1 at 929.761 kb on - strand, within nqrA-1 at 929.761 kb on - strand, within nqrA-1 at 929.762 kb on + strand, within nqrA-1 at 929.770 kb on - strand, within nqrA-1 at 929.803 kb on - strand, within nqrA-1 at 929.851 kb on + strand, within nqrA-1 at 929.859 kb on - strand, within nqrA-1 at 929.861 kb on + strand, within nqrA-1 at 929.952 kb on - strand, within nqrA-1 at 930.030 kb on + strand, within nqrA-1 at 930.055 kb on + strand, within nqrA-1 at 930.063 kb on - strand, within nqrA-1 at 930.063 kb on - strand, within nqrA-1 at 930.073 kb on - strand, within nqrA-1 at 930.135 kb on + strand, within nqrA-1 at 930.146 kb on + strand, within nqrA-1 at 930.232 kb on - strand at 930.259 kb on + strand at 930.272 kb on + strand at 930.280 kb on + strand at 930.280 kb on - strand at 930.280 kb on - strand at 930.280 kb on - strand at 930.280 kb on - strand at 930.303 kb on - strand at 930.405 kb on - strand at 930.558 kb on + strand, within nqrB-1 at 930.568 kb on + strand, within nqrB-1 at 930.591 kb on - strand, within nqrB-1 at 930.593 kb on + strand, within nqrB-1 at 930.601 kb on - strand, within nqrB-1 at 930.601 kb on - strand, within nqrB-1 at 930.601 kb on - strand, within nqrB-1 at 930.601 kb on - strand, within nqrB-1 at 930.629 kb on - strand, within nqrB-1 at 930.793 kb on - strand, within nqrB-1 at 930.793 kb on - strand, within nqrB-1 at 930.863 kb on - strand, within nqrB-1 at 930.881 kb on + strand, within nqrB-1 at 930.881 kb on - strand, within nqrB-1 at 930.881 kb on - strand, within nqrB-1 at 931.084 kb on + strand, within nqrB-1 at 931.086 kb on - strand, within nqrB-1 at 931.112 kb on - strand, within nqrB-1 at 931.175 kb on - strand, within nqrB-1 at 931.180 kb on - strand, within nqrB-1
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 927,999 - SO0900 0.54 +1.2 928,038 - SO0900 0.58 -0.8 928,154 - SO0900 0.69 +0.8 928,156 + SO0900 0.69 -1.5 928,316 + SO0900 0.85 +0.0 928,316 + SO0900 0.85 -2.9 928,316 + SO0900 0.85 +0.6 928,324 - SO0900 0.85 +0.8 928,324 - SO0900 0.85 -0.4 928,324 - SO0900 0.85 +1.1 928,331 + SO0900 0.86 -0.2 928,382 - +0.6 928,505 - -0.8 928,537 + +0.2 928,647 + +0.5 928,994 + -1.3 928,994 + -0.2 928,994 + -0.2 928,994 + -1.3 929,002 - +0.5 929,002 - -1.9 929,002 - -0.3 929,053 + -1.3 929,082 + nqrA-1 SO0902 0.11 +1.2 929,216 - nqrA-1 SO0902 0.21 -0.1 929,251 + nqrA-1 SO0902 0.23 +1.7 929,318 - nqrA-1 SO0902 0.28 +0.7 929,324 + nqrA-1 SO0902 0.29 +1.6 929,331 + nqrA-1 SO0902 0.29 -1.5 929,336 + nqrA-1 SO0902 0.30 -0.1 929,339 - nqrA-1 SO0902 0.30 +1.5 929,339 - nqrA-1 SO0902 0.30 -0.2 929,458 + nqrA-1 SO0902 0.39 -0.5 929,466 - nqrA-1 SO0902 0.39 -0.7 929,545 + nqrA-1 SO0902 0.45 -0.3 929,553 - nqrA-1 SO0902 0.45 -3.4 929,553 - nqrA-1 SO0902 0.45 -1.3 929,570 + nqrA-1 SO0902 0.47 -1.0 929,603 - nqrA-1 SO0902 0.49 -0.0 929,616 - nqrA-1 SO0902 0.50 -1.6 929,616 - nqrA-1 SO0902 0.50 -1.3 929,616 - nqrA-1 SO0902 0.50 -0.7 929,649 - nqrA-1 SO0902 0.52 -0.1 929,649 - nqrA-1 SO0902 0.52 -2.5 929,706 + nqrA-1 SO0902 0.57 +0.8 929,714 - nqrA-1 SO0902 0.57 -2.6 929,721 + nqrA-1 SO0902 0.58 +0.1 929,721 + nqrA-1 SO0902 0.58 -0.0 929,721 + nqrA-1 SO0902 0.58 -2.4 929,721 + nqrA-1 SO0902 0.58 +0.1 929,721 + nqrA-1 SO0902 0.58 -1.4 929,721 + nqrA-1 SO0902 0.58 -2.4 929,753 + nqrA-1 SO0902 0.60 -0.2 929,761 - nqrA-1 SO0902 0.61 -0.4 929,761 - nqrA-1 SO0902 0.61 +0.1 929,762 + nqrA-1 SO0902 0.61 +1.8 929,770 - nqrA-1 SO0902 0.61 +1.2 929,803 - nqrA-1 SO0902 0.64 -0.2 929,851 + nqrA-1 SO0902 0.67 -0.9 929,859 - nqrA-1 SO0902 0.68 +0.4 929,861 + nqrA-1 SO0902 0.68 -0.4 929,952 - nqrA-1 SO0902 0.75 -0.7 930,030 + nqrA-1 SO0902 0.80 -0.7 930,055 + nqrA-1 SO0902 0.82 -0.8 930,063 - nqrA-1 SO0902 0.83 -2.6 930,063 - nqrA-1 SO0902 0.83 +1.6 930,073 - nqrA-1 SO0902 0.83 +0.9 930,135 + nqrA-1 SO0902 0.88 +1.0 930,146 + nqrA-1 SO0902 0.89 -1.7 930,232 - -1.4 930,259 + +0.2 930,272 + -0.1 930,280 + +2.8 930,280 - -1.0 930,280 - -1.4 930,280 - -0.6 930,280 - -0.9 930,303 - -0.3 930,405 - -0.1 930,558 + nqrB-1 SO0903 0.21 -0.7 930,568 + nqrB-1 SO0903 0.22 +0.3 930,591 - nqrB-1 SO0903 0.24 -1.0 930,593 + nqrB-1 SO0903 0.24 +0.1 930,601 - nqrB-1 SO0903 0.24 +0.5 930,601 - nqrB-1 SO0903 0.24 -2.3 930,601 - nqrB-1 SO0903 0.24 +0.6 930,601 - nqrB-1 SO0903 0.24 -0.4 930,629 - nqrB-1 SO0903 0.27 -1.8 930,793 - nqrB-1 SO0903 0.40 -1.2 930,793 - nqrB-1 SO0903 0.40 +1.4 930,863 - nqrB-1 SO0903 0.46 -0.5 930,881 + nqrB-1 SO0903 0.47 -1.7 930,881 - nqrB-1 SO0903 0.47 -0.9 930,881 - nqrB-1 SO0903 0.47 -2.8 931,084 + nqrB-1 SO0903 0.64 -0.8 931,086 - nqrB-1 SO0903 0.64 -1.5 931,112 - nqrB-1 SO0903 0.66 -3.7 931,175 - nqrB-1 SO0903 0.71 -2.6 931,180 - nqrB-1 SO0903 0.71 +2.9
Or see this region's nucleotide sequence