Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0885 and SO0886 are separated by 276 nucleotides SO0886 and SO_0887 are separated by 168 nucleotides SO_0887 and SO0888 are separated by 73 nucleotides
SO0885: SO0885 - ABC transporter, ATP-binding protein (NCBI ptt file), at 913,424 to 915,337
SO0885
SO0886: SO0886 - conserved hypothetical protein (NCBI ptt file), at 915,614 to 915,814
SO0886
SO_0887: SO_0887 - agmatine deiminase (RefSeq), at 915,983 to 917,095
_0887
SO0888: SO0888 - amidase family protein (NCBI ptt file), at 917,169 to 918,875
SO0888
Position (kb) 915
916
917
918 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 915.049 kb on - strand, within SO0885 at 915.059 kb on - strand, within SO0885 at 915.059 kb on - strand, within SO0885 at 915.158 kb on - strand at 915.158 kb on - strand at 915.188 kb on - strand at 915.215 kb on + strand at 915.223 kb on - strand at 915.308 kb on + strand at 915.316 kb on - strand at 915.316 kb on - strand at 915.316 kb on - strand at 915.482 kb on + strand at 915.491 kb on - strand at 915.522 kb on + strand at 915.525 kb on + strand at 915.530 kb on - strand at 915.804 kb on + strand at 915.807 kb on - strand at 915.921 kb on - strand at 915.940 kb on + strand at 916.012 kb on + strand at 916.025 kb on - strand at 916.116 kb on + strand, within SO_0887 at 916.183 kb on + strand, within SO_0887 at 916.191 kb on - strand, within SO_0887 at 916.252 kb on - strand, within SO_0887 at 916.296 kb on + strand, within SO_0887 at 916.329 kb on + strand, within SO_0887 at 916.329 kb on + strand, within SO_0887 at 916.370 kb on + strand, within SO_0887 at 916.459 kb on - strand, within SO_0887 at 916.542 kb on - strand, within SO_0887 at 916.555 kb on + strand, within SO_0887 at 916.698 kb on + strand, within SO_0887 at 916.698 kb on + strand, within SO_0887 at 917.003 kb on + strand at 917.019 kb on - strand at 917.072 kb on + strand at 917.213 kb on + strand at 917.221 kb on - strand at 917.312 kb on + strand at 917.334 kb on - strand at 917.383 kb on + strand, within SO0888 at 917.383 kb on + strand, within SO0888 at 917.383 kb on + strand, within SO0888 at 917.383 kb on + strand, within SO0888 at 917.391 kb on - strand, within SO0888 at 917.391 kb on - strand, within SO0888 at 917.411 kb on - strand, within SO0888 at 917.423 kb on - strand, within SO0888 at 917.589 kb on + strand, within SO0888 at 917.589 kb on + strand, within SO0888 at 917.624 kb on + strand, within SO0888 at 917.734 kb on + strand, within SO0888 at 917.761 kb on + strand, within SO0888 at 917.761 kb on + strand, within SO0888 at 917.767 kb on - strand, within SO0888 at 917.769 kb on - strand, within SO0888 at 917.861 kb on + strand, within SO0888 at 918.002 kb on + strand, within SO0888 at 918.010 kb on - strand, within SO0888 at 918.010 kb on - strand, within SO0888
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 915,049 - SO0885 0.85 -1.4 915,059 - SO0885 0.85 -2.8 915,059 - SO0885 0.85 +0.4 915,158 - +2.0 915,158 - -0.2 915,188 - +0.3 915,215 + +0.2 915,223 - -0.2 915,308 + -1.3 915,316 - +0.3 915,316 - -0.4 915,316 - -2.5 915,482 + -2.7 915,491 - +0.2 915,522 + +0.7 915,525 + -0.4 915,530 - +0.6 915,804 + -1.4 915,807 - -0.9 915,921 - -1.1 915,940 + -1.9 916,012 + -0.3 916,025 - -0.3 916,116 + SO_0887 0.12 -0.4 916,183 + SO_0887 0.18 +0.4 916,191 - SO_0887 0.19 -1.8 916,252 - SO_0887 0.24 -1.1 916,296 + SO_0887 0.28 -0.9 916,329 + SO_0887 0.31 -0.2 916,329 + SO_0887 0.31 -2.1 916,370 + SO_0887 0.35 -1.0 916,459 - SO_0887 0.43 -1.4 916,542 - SO_0887 0.50 -1.1 916,555 + SO_0887 0.51 -0.3 916,698 + SO_0887 0.64 -1.7 916,698 + SO_0887 0.64 -0.4 917,003 + +0.7 917,019 - +0.9 917,072 + -2.4 917,213 + -1.5 917,221 - -2.1 917,312 + -2.0 917,334 - -1.1 917,383 + SO0888 0.13 +0.1 917,383 + SO0888 0.13 -0.5 917,383 + SO0888 0.13 -0.2 917,383 + SO0888 0.13 -1.2 917,391 - SO0888 0.13 -1.7 917,391 - SO0888 0.13 +0.4 917,411 - SO0888 0.14 +0.4 917,423 - SO0888 0.15 -1.5 917,589 + SO0888 0.25 -2.2 917,589 + SO0888 0.25 -1.2 917,624 + SO0888 0.27 -2.0 917,734 + SO0888 0.33 -0.8 917,761 + SO0888 0.35 -2.2 917,761 + SO0888 0.35 -2.0 917,767 - SO0888 0.35 +1.1 917,769 - SO0888 0.35 -0.5 917,861 + SO0888 0.41 -0.4 918,002 + SO0888 0.49 -1.4 918,010 - SO0888 0.49 -2.4 918,010 - SO0888 0.49 -0.6
Or see this region's nucleotide sequence