Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0821 and SO0822 are separated by 4 nucleotides SO0822 and SO0823 are separated by 77 nucleotides
SO0821: SO0821 - ABC transporter, ATP-binding/permease protein (NCBI ptt file), at 836,192 to 838,162
SO0821
SO0822: SO0822 - outer membrane efflux family protein (NCBI ptt file), at 838,167 to 839,585
SO0822
SO0823: SO0823 - conserved hypothetical protein (NCBI ptt file), at 839,663 to 840,787
SO0823
Position (kb) 838
839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 837.177 kb on + strand, within SO0821 at 837.192 kb on + strand, within SO0821 at 837.243 kb on + strand, within SO0821 at 837.243 kb on + strand, within SO0821 at 837.243 kb on + strand, within SO0821 at 837.243 kb on + strand, within SO0821 at 837.255 kb on + strand, within SO0821 at 837.277 kb on + strand, within SO0821 at 837.450 kb on + strand, within SO0821 at 837.470 kb on + strand, within SO0821 at 837.496 kb on + strand, within SO0821 at 837.651 kb on - strand, within SO0821 at 837.684 kb on - strand, within SO0821 at 837.689 kb on - strand, within SO0821 at 837.699 kb on - strand, within SO0821 at 837.790 kb on - strand, within SO0821 at 837.810 kb on + strand, within SO0821 at 837.820 kb on + strand, within SO0821 at 837.833 kb on - strand, within SO0821 at 837.840 kb on + strand, within SO0821 at 837.952 kb on - strand, within SO0821 at 837.980 kb on + strand at 837.980 kb on + strand at 837.980 kb on + strand at 837.988 kb on - strand at 838.179 kb on + strand at 838.209 kb on + strand at 838.215 kb on - strand at 838.215 kb on - strand at 838.234 kb on + strand at 838.237 kb on + strand at 838.237 kb on + strand at 838.242 kb on - strand at 838.300 kb on + strand at 838.300 kb on + strand at 838.484 kb on + strand, within SO0822 at 838.489 kb on + strand, within SO0822 at 838.491 kb on + strand, within SO0822 at 838.492 kb on - strand, within SO0822 at 838.582 kb on + strand, within SO0822 at 838.588 kb on + strand, within SO0822 at 838.590 kb on - strand, within SO0822 at 838.616 kb on - strand, within SO0822 at 838.646 kb on + strand, within SO0822 at 838.654 kb on - strand, within SO0822 at 838.654 kb on - strand, within SO0822 at 838.674 kb on + strand, within SO0822 at 838.735 kb on + strand, within SO0822 at 838.781 kb on + strand, within SO0822 at 838.781 kb on + strand, within SO0822 at 838.789 kb on - strand, within SO0822 at 838.832 kb on + strand, within SO0822 at 838.968 kb on + strand, within SO0822 at 839.194 kb on + strand, within SO0822 at 839.297 kb on - strand, within SO0822 at 839.347 kb on - strand, within SO0822 at 839.370 kb on - strand, within SO0822 at 839.375 kb on + strand, within SO0822 at 839.401 kb on - strand, within SO0822 at 839.401 kb on - strand, within SO0822 at 839.403 kb on + strand, within SO0822 at 839.677 kb on - strand at 839.705 kb on + strand at 839.795 kb on - strand, within SO0823 at 839.795 kb on - strand, within SO0823 at 839.886 kb on - strand, within SO0823 at 839.886 kb on - strand, within SO0823 at 839.892 kb on - strand, within SO0823 at 839.892 kb on - strand, within SO0823 at 839.893 kb on - strand, within SO0823 at 839.952 kb on - strand, within SO0823 at 839.952 kb on - strand, within SO0823 at 840.113 kb on - strand, within SO0823 at 840.115 kb on + strand, within SO0823 at 840.123 kb on - strand, within SO0823 at 840.123 kb on - strand, within SO0823 at 840.150 kb on - strand, within SO0823 at 840.192 kb on - strand, within SO0823 at 840.192 kb on - strand, within SO0823 at 840.274 kb on + strand, within SO0823 at 840.284 kb on + strand, within SO0823 at 840.385 kb on + strand, within SO0823 at 840.409 kb on - strand, within SO0823
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 837,177 + SO0821 0.50 +1.1 837,192 + SO0821 0.51 -0.0 837,243 + SO0821 0.53 -0.8 837,243 + SO0821 0.53 -2.3 837,243 + SO0821 0.53 +0.9 837,243 + SO0821 0.53 +0.9 837,255 + SO0821 0.54 -1.1 837,277 + SO0821 0.55 -0.5 837,450 + SO0821 0.64 +0.1 837,470 + SO0821 0.65 -2.6 837,496 + SO0821 0.66 +1.2 837,651 - SO0821 0.74 -3.3 837,684 - SO0821 0.76 +1.6 837,689 - SO0821 0.76 +0.6 837,699 - SO0821 0.76 -0.3 837,790 - SO0821 0.81 +1.5 837,810 + SO0821 0.82 -0.3 837,820 + SO0821 0.83 +0.4 837,833 - SO0821 0.83 -2.7 837,840 + SO0821 0.84 +0.5 837,952 - SO0821 0.89 -0.0 837,980 + -1.8 837,980 + -2.5 837,980 + -0.8 837,988 - -2.7 838,179 + -1.1 838,209 + +0.5 838,215 - +1.2 838,215 - +0.0 838,234 + -1.2 838,237 + +0.7 838,237 + +0.5 838,242 - -1.0 838,300 + -0.2 838,300 + -1.4 838,484 + SO0822 0.22 -0.7 838,489 + SO0822 0.23 +1.2 838,491 + SO0822 0.23 +1.4 838,492 - SO0822 0.23 -2.0 838,582 + SO0822 0.29 -1.0 838,588 + SO0822 0.30 +1.3 838,590 - SO0822 0.30 -0.9 838,616 - SO0822 0.32 -2.4 838,646 + SO0822 0.34 +2.7 838,654 - SO0822 0.34 -1.0 838,654 - SO0822 0.34 -0.5 838,674 + SO0822 0.36 +2.4 838,735 + SO0822 0.40 +1.3 838,781 + SO0822 0.43 +1.7 838,781 + SO0822 0.43 +2.0 838,789 - SO0822 0.44 -0.6 838,832 + SO0822 0.47 -0.1 838,968 + SO0822 0.56 +0.1 839,194 + SO0822 0.72 -1.0 839,297 - SO0822 0.80 +0.8 839,347 - SO0822 0.83 +1.0 839,370 - SO0822 0.85 -0.4 839,375 + SO0822 0.85 +0.2 839,401 - SO0822 0.87 -0.2 839,401 - SO0822 0.87 -2.0 839,403 + SO0822 0.87 +0.0 839,677 - -1.3 839,705 + -1.4 839,795 - SO0823 0.12 -1.6 839,795 - SO0823 0.12 -3.1 839,886 - SO0823 0.20 +2.1 839,886 - SO0823 0.20 +0.6 839,892 - SO0823 0.20 +0.4 839,892 - SO0823 0.20 +0.4 839,893 - SO0823 0.20 +0.2 839,952 - SO0823 0.26 +1.0 839,952 - SO0823 0.26 +0.4 840,113 - SO0823 0.40 -1.3 840,115 + SO0823 0.40 -0.4 840,123 - SO0823 0.41 +0.0 840,123 - SO0823 0.41 +1.3 840,150 - SO0823 0.43 -0.5 840,192 - SO0823 0.47 -0.8 840,192 - SO0823 0.47 +1.0 840,274 + SO0823 0.54 -0.1 840,284 + SO0823 0.55 -0.8 840,385 + SO0823 0.64 -1.2 840,409 - SO0823 0.66 +1.3
Or see this region's nucleotide sequence