Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rbsK and SO0811 are separated by 20 nucleotides SO0811 and SO0812 are separated by 203 nucleotides
SO0810: rbsK - ribokinase (NCBI ptt file), at 821,797 to 822,708
rbsK
SO0811: SO0811 - inosine-uridine preferring nucleoside hydrolase family protein (NCBI ptt file), at 822,729 to 823,685
SO0811
SO0812: SO0812 - hypothetical protein (NCBI ptt file), at 823,889 to 825,235
SO0812
Position (kb) 822
823
824 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 821.770 kb on + strand at 821.790 kb on + strand at 821.941 kb on + strand, within rbsK at 822.107 kb on + strand, within rbsK at 822.209 kb on + strand, within rbsK at 822.298 kb on + strand, within rbsK at 822.310 kb on + strand, within rbsK at 822.508 kb on + strand, within rbsK at 822.516 kb on - strand, within rbsK at 822.534 kb on - strand, within rbsK at 822.552 kb on + strand, within rbsK at 822.600 kb on + strand, within rbsK at 822.608 kb on - strand, within rbsK at 822.721 kb on - strand at 822.768 kb on + strand at 822.769 kb on - strand at 822.776 kb on - strand at 822.818 kb on - strand at 822.846 kb on - strand, within SO0811 at 822.875 kb on + strand, within SO0811 at 822.875 kb on + strand, within SO0811 at 822.912 kb on + strand, within SO0811 at 823.054 kb on + strand, within SO0811 at 823.054 kb on + strand, within SO0811 at 823.110 kb on + strand, within SO0811 at 823.115 kb on + strand, within SO0811 at 823.115 kb on + strand, within SO0811 at 823.115 kb on + strand, within SO0811 at 823.118 kb on - strand, within SO0811 at 823.123 kb on - strand, within SO0811 at 823.383 kb on + strand, within SO0811 at 823.412 kb on + strand, within SO0811 at 823.420 kb on - strand, within SO0811 at 823.430 kb on + strand, within SO0811 at 823.524 kb on + strand, within SO0811 at 823.525 kb on + strand, within SO0811 at 823.533 kb on - strand, within SO0811 at 823.609 kb on + strand at 823.609 kb on + strand at 823.617 kb on - strand at 823.695 kb on + strand at 823.703 kb on - strand at 823.703 kb on - strand at 823.703 kb on - strand at 823.703 kb on - strand at 823.740 kb on + strand at 823.752 kb on + strand at 823.760 kb on - strand at 823.915 kb on - strand at 823.922 kb on - strand at 823.927 kb on + strand at 823.943 kb on - strand at 824.043 kb on + strand, within SO0812 at 824.051 kb on - strand, within SO0812 at 824.100 kb on - strand, within SO0812 at 824.233 kb on + strand, within SO0812 at 824.239 kb on + strand, within SO0812 at 824.247 kb on - strand, within SO0812 at 824.249 kb on - strand, within SO0812 at 824.269 kb on - strand, within SO0812 at 824.271 kb on - strand, within SO0812 at 824.334 kb on - strand, within SO0812 at 824.334 kb on - strand, within SO0812 at 824.588 kb on - strand, within SO0812
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 821,770 + -0.8 821,790 + -0.3 821,941 + rbsK SO0810 0.16 -1.4 822,107 + rbsK SO0810 0.34 -1.9 822,209 + rbsK SO0810 0.45 +0.8 822,298 + rbsK SO0810 0.55 -0.5 822,310 + rbsK SO0810 0.56 -1.0 822,508 + rbsK SO0810 0.78 -0.2 822,516 - rbsK SO0810 0.79 -1.4 822,534 - rbsK SO0810 0.81 +0.9 822,552 + rbsK SO0810 0.83 -0.8 822,600 + rbsK SO0810 0.88 -0.8 822,608 - rbsK SO0810 0.89 -0.2 822,721 - +0.8 822,768 + -0.8 822,769 - -1.1 822,776 - +0.5 822,818 - -1.4 822,846 - SO0811 0.12 +1.7 822,875 + SO0811 0.15 -0.0 822,875 + SO0811 0.15 -1.1 822,912 + SO0811 0.19 -0.9 823,054 + SO0811 0.34 +0.5 823,054 + SO0811 0.34 +0.4 823,110 + SO0811 0.40 -0.4 823,115 + SO0811 0.40 -1.7 823,115 + SO0811 0.40 +0.1 823,115 + SO0811 0.40 +0.4 823,118 - SO0811 0.41 +0.9 823,123 - SO0811 0.41 +1.2 823,383 + SO0811 0.68 +0.0 823,412 + SO0811 0.71 +0.2 823,420 - SO0811 0.72 -0.3 823,430 + SO0811 0.73 -1.6 823,524 + SO0811 0.83 +0.4 823,525 + SO0811 0.83 -0.5 823,533 - SO0811 0.84 -1.0 823,609 + -0.4 823,609 + -1.2 823,617 - -2.5 823,695 + +1.3 823,703 - -0.9 823,703 - -1.3 823,703 - +0.5 823,703 - -0.7 823,740 + +0.4 823,752 + +1.6 823,760 - +0.0 823,915 - +0.5 823,922 - -1.5 823,927 + +2.1 823,943 - -0.1 824,043 + SO0812 0.11 +1.0 824,051 - SO0812 0.12 -0.5 824,100 - SO0812 0.16 +3.0 824,233 + SO0812 0.26 +2.4 824,239 + SO0812 0.26 +0.5 824,247 - SO0812 0.27 -1.2 824,249 - SO0812 0.27 +0.3 824,269 - SO0812 0.28 +0.1 824,271 - SO0812 0.28 -3.5 824,334 - SO0812 0.33 +1.0 824,334 - SO0812 0.33 +0.9 824,588 - SO0812 0.52 +0.5
Or see this region's nucleotide sequence