Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hpt-1 and SO0808 are separated by 366 nucleotides SO0808 and azu are separated by 100 nucleotides azu and rbsK are separated by 169 nucleotides
SO0807: hpt-1 - hypoxanthine-guanine phosphoribosyltransferase (NCBI ptt file), at 819,812 to 820,378
hpt-1
SO0808: SO0808 - conserved hypothetical protein (NCBI ptt file), at 820,745 to 821,050
SO0808
SO0809: azu - azurin precursor (NCBI ptt file), at 821,151 to 821,627
azu
SO0810: rbsK - ribokinase (NCBI ptt file), at 821,797 to 822,708
rbsK
Position (kb) 820
821
822 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 819.935 kb on - strand, within hpt-1 at 819.950 kb on + strand, within hpt-1 at 820.066 kb on + strand, within hpt-1 at 820.066 kb on + strand, within hpt-1 at 820.131 kb on - strand, within hpt-1 at 820.140 kb on + strand, within hpt-1 at 820.187 kb on - strand, within hpt-1 at 820.318 kb on - strand, within hpt-1 at 820.336 kb on + strand at 820.337 kb on + strand at 820.344 kb on - strand at 820.344 kb on - strand at 820.449 kb on + strand at 820.486 kb on + strand at 820.487 kb on + strand at 820.495 kb on - strand at 820.893 kb on - strand, within SO0808 at 820.896 kb on + strand, within SO0808 at 820.931 kb on - strand, within SO0808 at 820.935 kb on - strand, within SO0808 at 821.045 kb on + strand at 821.175 kb on - strand at 821.247 kb on + strand, within azu at 821.264 kb on - strand, within azu at 821.395 kb on + strand, within azu at 821.400 kb on + strand, within azu at 821.400 kb on + strand, within azu at 821.434 kb on + strand, within azu at 821.438 kb on + strand, within azu at 821.478 kb on + strand, within azu at 821.506 kb on + strand, within azu at 821.524 kb on - strand, within azu at 821.567 kb on + strand, within azu at 821.582 kb on + strand at 821.585 kb on - strand at 821.590 kb on - strand at 821.592 kb on + strand at 821.636 kb on + strand at 821.644 kb on - strand at 821.644 kb on - strand at 821.770 kb on + strand at 821.790 kb on + strand at 821.941 kb on + strand, within rbsK
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 819,935 - hpt-1 SO0807 0.22 +0.8 819,950 + hpt-1 SO0807 0.24 +0.5 820,066 + hpt-1 SO0807 0.45 -3.1 820,066 + hpt-1 SO0807 0.45 -0.2 820,131 - hpt-1 SO0807 0.56 -0.7 820,140 + hpt-1 SO0807 0.58 -0.5 820,187 - hpt-1 SO0807 0.66 -0.3 820,318 - hpt-1 SO0807 0.89 -2.7 820,336 + -1.1 820,337 + -1.2 820,344 - -0.3 820,344 - +0.2 820,449 + -0.4 820,486 + +0.2 820,487 + +1.0 820,495 - -0.5 820,893 - SO0808 0.48 -0.2 820,896 + SO0808 0.49 -2.0 820,931 - SO0808 0.61 -2.4 820,935 - SO0808 0.62 -1.3 821,045 + +0.0 821,175 - -1.6 821,247 + azu SO0809 0.20 +0.3 821,264 - azu SO0809 0.24 +0.2 821,395 + azu SO0809 0.51 +1.1 821,400 + azu SO0809 0.52 -0.3 821,400 + azu SO0809 0.52 +2.7 821,434 + azu SO0809 0.59 +2.2 821,438 + azu SO0809 0.60 -1.0 821,478 + azu SO0809 0.69 -1.0 821,506 + azu SO0809 0.74 +0.1 821,524 - azu SO0809 0.78 +1.4 821,567 + azu SO0809 0.87 -1.6 821,582 + -0.8 821,585 - -1.1 821,590 - -0.7 821,592 + -0.4 821,636 + -0.1 821,644 - +0.0 821,644 - +0.5 821,770 + -0.8 821,790 + -0.3 821,941 + rbsK SO0810 0.16 -1.4
Or see this region's nucleotide sequence