Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt groEL and SO0705 are separated by 354 nucleotides SO0705 and SO0706 are separated by 3 nucleotides
SO0704: groEL - chaperonin GroEL (NCBI ptt file), at 721,019 to 722,656
groEL
SO0705: SO0705 - transcriptional regulator, Cro/CI family (NCBI ptt file), at 723,011 to 723,304
SO0705
SO0706: SO0706 - conserved hypothetical protein (NCBI ptt file), at 723,308 to 724,609
SO0706
Position (kb) 723
724 Strain fitness (log2 ratio) -1
0
1
2 at 722.651 kb on + strand at 722.702 kb on + strand at 722.710 kb on - strand at 723.214 kb on - strand, within SO0705 at 723.307 kb on + strand at 723.325 kb on - strand at 723.330 kb on + strand at 723.386 kb on + strand at 723.386 kb on + strand at 723.386 kb on + strand at 723.391 kb on + strand at 723.563 kb on - strand, within SO0706 at 723.578 kb on - strand, within SO0706 at 723.601 kb on - strand, within SO0706 at 723.828 kb on - strand, within SO0706 at 723.901 kb on - strand, within SO0706 at 723.955 kb on + strand, within SO0706 at 723.960 kb on + strand, within SO0706 at 723.976 kb on - strand, within SO0706 at 724.004 kb on + strand, within SO0706 at 724.004 kb on + strand, within SO0706 at 724.012 kb on - strand, within SO0706 at 724.012 kb on - strand, within SO0706 at 724.030 kb on - strand, within SO0706 at 724.140 kb on - strand, within SO0706 at 724.153 kb on + strand, within SO0706 at 724.240 kb on - strand, within SO0706 at 724.266 kb on + strand, within SO0706 at 724.289 kb on + strand, within SO0706 at 724.297 kb on - strand, within SO0706 at 724.299 kb on + strand, within SO0706
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 722,651 + -0.8 722,702 + -1.1 722,710 - +2.2 723,214 - SO0705 0.69 -1.2 723,307 + -1.1 723,325 - -0.5 723,330 + -0.1 723,386 + +1.9 723,386 + +0.6 723,386 + +0.2 723,391 + +0.8 723,563 - SO0706 0.20 -0.4 723,578 - SO0706 0.21 +0.1 723,601 - SO0706 0.23 +0.6 723,828 - SO0706 0.40 +0.4 723,901 - SO0706 0.46 -0.8 723,955 + SO0706 0.50 -0.7 723,960 + SO0706 0.50 -0.5 723,976 - SO0706 0.51 +0.8 724,004 + SO0706 0.53 -1.2 724,004 + SO0706 0.53 +0.4 724,012 - SO0706 0.54 -0.5 724,012 - SO0706 0.54 +0.4 724,030 - SO0706 0.55 -1.1 724,140 - SO0706 0.64 +0.0 724,153 + SO0706 0.65 +0.2 724,240 - SO0706 0.72 +1.1 724,266 + SO0706 0.74 -0.4 724,289 + SO0706 0.75 -0.6 724,297 - SO0706 0.76 +0.5 724,299 + SO0706 0.76 +0.5
Or see this region's nucleotide sequence