Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0497 and SO0499 are separated by 485 nucleotides SO0499 and SO0500 are separated by 498 nucleotides
SO0497: SO0497 - hypothetical protein (NCBI ptt file), at 521,627 to 523,588
SO0497
SO0499: SO0499 - hypothetical protein (NCBI ptt file), at 524,074 to 524,634
SO0499
SO0500: SO0500 - methyl-accepting chemotaxis protein (NCBI ptt file), at 525,133 to 526,764
SO0500
Position (kb) 524
525 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 523.104 kb on + strand, within SO0497 at 523.125 kb on + strand, within SO0497 at 523.134 kb on - strand, within SO0497 at 523.180 kb on + strand, within SO0497 at 523.180 kb on + strand, within SO0497 at 523.271 kb on + strand, within SO0497 at 523.300 kb on - strand, within SO0497 at 523.570 kb on + strand at 523.578 kb on - strand at 523.609 kb on - strand at 523.791 kb on - strand at 523.831 kb on + strand at 523.834 kb on - strand at 523.864 kb on + strand at 523.864 kb on - strand at 523.871 kb on + strand at 523.931 kb on + strand at 523.936 kb on + strand at 523.945 kb on + strand at 523.948 kb on - strand at 523.954 kb on + strand at 524.039 kb on + strand at 524.770 kb on + strand at 524.811 kb on - strand at 524.881 kb on - strand at 524.898 kb on + strand at 524.898 kb on + strand at 524.955 kb on + strand at 524.956 kb on + strand at 524.956 kb on + strand at 524.956 kb on + strand at 524.956 kb on + strand at 524.956 kb on + strand at 525.011 kb on + strand at 525.019 kb on - strand at 525.043 kb on - strand at 525.051 kb on - strand at 525.089 kb on + strand at 525.097 kb on - strand at 525.166 kb on - strand at 525.173 kb on + strand at 525.179 kb on - strand at 525.190 kb on - strand at 525.221 kb on + strand at 525.270 kb on - strand at 525.279 kb on + strand at 525.289 kb on + strand at 525.325 kb on - strand, within SO0500 at 525.356 kb on + strand, within SO0500 at 525.356 kb on + strand, within SO0500 at 525.359 kb on - strand, within SO0500 at 525.359 kb on - strand, within SO0500 at 525.376 kb on + strand, within SO0500 at 525.376 kb on + strand, within SO0500 at 525.384 kb on - strand, within SO0500 at 525.384 kb on - strand, within SO0500 at 525.386 kb on + strand, within SO0500 at 525.386 kb on + strand, within SO0500 at 525.394 kb on - strand, within SO0500 at 525.409 kb on + strand, within SO0500 at 525.417 kb on - strand, within SO0500 at 525.439 kb on - strand at 525.493 kb on + strand, within SO0500 at 525.601 kb on - strand, within SO0500 at 525.623 kb on + strand, within SO0500 at 525.631 kb on - strand, within SO0500
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 523,104 + SO0497 0.75 -0.6 523,125 + SO0497 0.76 -0.5 523,134 - SO0497 0.77 -2.0 523,180 + SO0497 0.79 -1.8 523,180 + SO0497 0.79 -0.9 523,271 + SO0497 0.84 +0.6 523,300 - SO0497 0.85 -0.9 523,570 + -0.4 523,578 - +0.8 523,609 - +0.0 523,791 - +0.7 523,831 + -1.0 523,834 - -0.8 523,864 + -1.0 523,864 - +0.8 523,871 + +0.6 523,931 + -0.7 523,936 + +0.9 523,945 + -1.5 523,948 - -0.7 523,954 + -1.5 524,039 + -0.5 524,770 + +0.6 524,811 - -1.2 524,881 - -1.2 524,898 + +0.4 524,898 + -1.6 524,955 + -0.2 524,956 + -0.0 524,956 + +0.2 524,956 + -0.2 524,956 + -3.0 524,956 + +1.3 525,011 + -0.3 525,019 - +0.4 525,043 - -0.6 525,051 - -0.1 525,089 + +1.7 525,097 - -2.0 525,166 - +1.7 525,173 + +1.9 525,179 - -2.8 525,190 - +0.2 525,221 + -1.1 525,270 - -1.1 525,279 + +0.6 525,289 + -1.3 525,325 - SO0500 0.12 -1.2 525,356 + SO0500 0.14 +0.4 525,356 + SO0500 0.14 -0.8 525,359 - SO0500 0.14 -0.0 525,359 - SO0500 0.14 -1.1 525,376 + SO0500 0.15 +1.2 525,376 + SO0500 0.15 -0.4 525,384 - SO0500 0.15 -0.2 525,384 - SO0500 0.15 -1.3 525,386 + SO0500 0.16 +0.2 525,386 + SO0500 0.16 +0.7 525,394 - SO0500 0.16 -2.5 525,409 + SO0500 0.17 +1.2 525,417 - SO0500 0.17 +0.4 525,439 - +0.1 525,493 + SO0500 0.22 +2.2 525,601 - SO0500 0.29 +1.7 525,623 + SO0500 0.30 +0.9 525,631 - SO0500 0.31 +0.9
Or see this region's nucleotide sequence