Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0471 and SO0472 are separated by 101 nucleotides SO0472 and SO0472.1 are separated by 96 nucleotides SO0472.1 and SO0474 are separated by 73 nucleotides
SO0471: SO0471 - hypothetical dioxygenase (NCBI ptt file), at 495,533 to 496,612
SO0471
SO0472: SO0472 - membrane protein, putative (NCBI ptt file), at 496,714 to 497,835
SO0472
SO0472.1: SO0472.1 - hypothetical mitomycin resistance protein (NCBI ptt file), at 497,932 to 498,126
SO0472.1
SO0474: SO0474 - conserved hypothetical protein (NCBI ptt file), at 498,200 to 498,778
SO0474
Position (kb) 496
497
498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 495.717 kb on + strand, within SO0471 at 495.717 kb on + strand, within SO0471 at 495.725 kb on - strand, within SO0471 at 495.725 kb on - strand, within SO0471 at 495.725 kb on - strand, within SO0471 at 495.784 kb on - strand, within SO0471 at 495.789 kb on + strand, within SO0471 at 495.866 kb on + strand, within SO0471 at 495.866 kb on + strand, within SO0471 at 495.866 kb on + strand, within SO0471 at 495.866 kb on + strand, within SO0471 at 495.866 kb on + strand, within SO0471 at 495.866 kb on + strand, within SO0471 at 495.866 kb on + strand, within SO0471 at 495.866 kb on + strand, within SO0471 at 495.866 kb on + strand, within SO0471 at 495.866 kb on + strand, within SO0471 at 495.866 kb on + strand, within SO0471 at 495.874 kb on - strand, within SO0471 at 495.874 kb on - strand, within SO0471 at 495.874 kb on - strand, within SO0471 at 495.874 kb on - strand, within SO0471 at 495.874 kb on - strand, within SO0471 at 495.874 kb on - strand, within SO0471 at 495.874 kb on - strand, within SO0471 at 495.874 kb on - strand, within SO0471 at 495.874 kb on - strand, within SO0471 at 495.874 kb on - strand, within SO0471 at 495.874 kb on - strand, within SO0471 at 495.874 kb on - strand, within SO0471 at 495.877 kb on + strand, within SO0471 at 495.883 kb on + strand, within SO0471 at 495.891 kb on - strand, within SO0471 at 495.891 kb on - strand, within SO0471 at 495.901 kb on + strand, within SO0471 at 495.901 kb on + strand, within SO0471 at 495.901 kb on + strand, within SO0471 at 495.901 kb on + strand, within SO0471 at 495.908 kb on - strand, within SO0471 at 496.058 kb on + strand, within SO0471 at 496.263 kb on + strand, within SO0471 at 496.271 kb on - strand, within SO0471 at 496.316 kb on + strand, within SO0471 at 496.412 kb on + strand, within SO0471 at 496.434 kb on + strand, within SO0471 at 496.450 kb on + strand, within SO0471 at 496.456 kb on - strand, within SO0471 at 496.458 kb on - strand, within SO0471 at 496.495 kb on + strand, within SO0471 at 496.649 kb on - strand at 496.686 kb on - strand at 496.824 kb on + strand at 496.901 kb on + strand, within SO0472 at 497.002 kb on - strand, within SO0472 at 497.003 kb on + strand, within SO0472 at 497.118 kb on + strand, within SO0472 at 497.197 kb on - strand, within SO0472 at 497.215 kb on - strand, within SO0472 at 497.345 kb on + strand, within SO0472 at 497.353 kb on - strand, within SO0472 at 497.492 kb on + strand, within SO0472 at 497.498 kb on + strand, within SO0472 at 497.567 kb on + strand, within SO0472 at 497.567 kb on + strand, within SO0472 at 497.567 kb on + strand, within SO0472 at 497.567 kb on + strand, within SO0472 at 497.567 kb on + strand, within SO0472 at 497.567 kb on + strand, within SO0472 at 497.567 kb on + strand, within SO0472 at 497.567 kb on + strand, within SO0472 at 497.575 kb on - strand, within SO0472 at 497.575 kb on - strand, within SO0472 at 497.575 kb on - strand, within SO0472 at 497.575 kb on - strand, within SO0472 at 497.594 kb on + strand, within SO0472 at 497.600 kb on + strand, within SO0472 at 497.600 kb on + strand, within SO0472 at 497.608 kb on - strand, within SO0472 at 497.608 kb on - strand, within SO0472 at 497.608 kb on - strand, within SO0472 at 497.608 kb on - strand, within SO0472 at 497.608 kb on - strand, within SO0472 at 497.667 kb on + strand, within SO0472 at 497.818 kb on - strand at 497.818 kb on - strand at 497.830 kb on + strand at 497.857 kb on - strand at 497.886 kb on + strand at 497.894 kb on - strand at 497.901 kb on + strand at 497.910 kb on - strand at 497.928 kb on - strand at 497.955 kb on - strand, within SO0472.1 at 497.993 kb on + strand, within SO0472.1 at 497.993 kb on + strand, within SO0472.1 at 498.114 kb on - strand at 498.244 kb on - strand at 498.428 kb on + strand, within SO0474 at 498.464 kb on + strand, within SO0474 at 498.534 kb on + strand, within SO0474 at 498.587 kb on + strand, within SO0474 at 498.631 kb on + strand, within SO0474 at 498.648 kb on + strand, within SO0474 at 498.757 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 495,717 + SO0471 0.17 -1.9 495,717 + SO0471 0.17 +2.1 495,725 - SO0471 0.18 -0.2 495,725 - SO0471 0.18 -1.2 495,725 - SO0471 0.18 +0.8 495,784 - SO0471 0.23 +1.1 495,789 + SO0471 0.24 -2.6 495,866 + SO0471 0.31 -2.7 495,866 + SO0471 0.31 -0.0 495,866 + SO0471 0.31 +0.6 495,866 + SO0471 0.31 -0.4 495,866 + SO0471 0.31 -2.3 495,866 + SO0471 0.31 +0.9 495,866 + SO0471 0.31 -0.4 495,866 + SO0471 0.31 -0.5 495,866 + SO0471 0.31 -0.3 495,866 + SO0471 0.31 +0.2 495,866 + SO0471 0.31 -0.5 495,874 - SO0471 0.32 -0.2 495,874 - SO0471 0.32 -0.2 495,874 - SO0471 0.32 -2.7 495,874 - SO0471 0.32 +0.3 495,874 - SO0471 0.32 -0.6 495,874 - SO0471 0.32 +0.3 495,874 - SO0471 0.32 -1.3 495,874 - SO0471 0.32 +0.0 495,874 - SO0471 0.32 -0.6 495,874 - SO0471 0.32 +1.0 495,874 - SO0471 0.32 -1.0 495,874 - SO0471 0.32 -2.6 495,877 + SO0471 0.32 +3.0 495,883 + SO0471 0.32 -2.6 495,891 - SO0471 0.33 -0.0 495,891 - SO0471 0.33 +0.1 495,901 + SO0471 0.34 +1.0 495,901 + SO0471 0.34 +1.7 495,901 + SO0471 0.34 +0.2 495,901 + SO0471 0.34 -2.0 495,908 - SO0471 0.35 +0.0 496,058 + SO0471 0.49 +1.8 496,263 + SO0471 0.68 +0.9 496,271 - SO0471 0.68 +1.0 496,316 + SO0471 0.72 -2.1 496,412 + SO0471 0.81 -1.7 496,434 + SO0471 0.83 +2.5 496,450 + SO0471 0.85 +2.7 496,456 - SO0471 0.85 -0.6 496,458 - SO0471 0.86 +0.4 496,495 + SO0471 0.89 -0.3 496,649 - -2.1 496,686 - -0.6 496,824 + -0.2 496,901 + SO0472 0.17 +0.2 497,002 - SO0472 0.26 +0.4 497,003 + SO0472 0.26 -0.0 497,118 + SO0472 0.36 -0.5 497,197 - SO0472 0.43 -3.1 497,215 - SO0472 0.45 +0.4 497,345 + SO0472 0.56 -2.7 497,353 - SO0472 0.57 +1.0 497,492 + SO0472 0.69 -1.0 497,498 + SO0472 0.70 +0.1 497,567 + SO0472 0.76 -0.2 497,567 + SO0472 0.76 -1.2 497,567 + SO0472 0.76 -1.9 497,567 + SO0472 0.76 -0.3 497,567 + SO0472 0.76 +0.3 497,567 + SO0472 0.76 -0.0 497,567 + SO0472 0.76 -0.0 497,567 + SO0472 0.76 -0.7 497,575 - SO0472 0.77 -1.9 497,575 - SO0472 0.77 +1.0 497,575 - SO0472 0.77 -2.2 497,575 - SO0472 0.77 +0.0 497,594 + SO0472 0.78 -2.7 497,600 + SO0472 0.79 -0.9 497,600 + SO0472 0.79 +0.7 497,608 - SO0472 0.80 -0.4 497,608 - SO0472 0.80 -1.7 497,608 - SO0472 0.80 +0.6 497,608 - SO0472 0.80 -1.5 497,608 - SO0472 0.80 -2.4 497,667 + SO0472 0.85 -0.4 497,818 - -0.3 497,818 - +0.6 497,830 + -0.1 497,857 - -0.3 497,886 + -1.2 497,894 - +0.7 497,901 + +2.3 497,910 - -0.5 497,928 - -0.7 497,955 - SO0472.1 0.12 -0.5 497,993 + SO0472.1 0.31 -0.7 497,993 + SO0472.1 0.31 -2.3 498,114 - -1.1 498,244 - -0.3 498,428 + SO0474 0.39 -1.7 498,464 + SO0474 0.46 +1.0 498,534 + SO0474 0.58 +0.3 498,587 + SO0474 0.67 +0.5 498,631 + SO0474 0.74 +0.3 498,648 + SO0474 0.77 +1.0 498,757 + +0.4
Or see this region's nucleotide sequence