Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0437 and SO0438 are separated by 75 nucleotides SO0438 and SO0439 overlap by 4 nucleotides SO0439 and SO0440 are separated by 97 nucleotides
SO0437: SO0437 - sensory box protein (NCBI ptt file), at 461,211 to 463,781
SO0437
SO0438: SO0438 - oxidoreductase, short chain dehydrogenase/reductase family (NCBI ptt file), at 463,857 to 464,660
SO0438
SO0439: SO0439 - hypothetical protein (NCBI ptt file), at 464,657 to 464,932
SO0439
SO0440: SO0440 - conserved hypothetical protein (NCBI ptt file), at 465,030 to 468,251
SO0440
Position (kb) 464
465 Strain fitness (log2 ratio) -2
-1
0
1
2 at 463.774 kb on + strand at 463.775 kb on - strand at 463.791 kb on + strand at 463.810 kb on + strand at 463.990 kb on + strand, within SO0438 at 463.998 kb on - strand, within SO0438 at 464.053 kb on + strand, within SO0438 at 464.149 kb on + strand, within SO0438 at 464.258 kb on + strand, within SO0438 at 464.260 kb on + strand, within SO0438 at 464.291 kb on + strand, within SO0438 at 464.299 kb on - strand, within SO0438 at 464.299 kb on - strand, within SO0438 at 464.299 kb on - strand, within SO0438 at 464.299 kb on - strand, within SO0438 at 464.456 kb on + strand, within SO0438 at 464.481 kb on + strand, within SO0438 at 464.511 kb on - strand, within SO0438 at 464.593 kb on + strand at 464.601 kb on - strand at 464.601 kb on - strand at 464.646 kb on + strand at 464.914 kb on + strand at 464.916 kb on + strand at 464.946 kb on + strand at 465.059 kb on - strand at 465.082 kb on - strand at 465.107 kb on + strand at 465.107 kb on + strand at 465.108 kb on + strand at 465.108 kb on + strand at 465.116 kb on - strand at 465.116 kb on - strand at 465.175 kb on + strand at 465.228 kb on - strand at 465.273 kb on - strand at 465.316 kb on - strand at 465.507 kb on + strand, within SO0440 at 465.549 kb on + strand, within SO0440 at 465.649 kb on - strand, within SO0440 at 465.758 kb on - strand, within SO0440 at 465.777 kb on + strand, within SO0440 at 465.813 kb on + strand, within SO0440 at 465.813 kb on + strand, within SO0440 at 465.813 kb on + strand, within SO0440 at 465.890 kb on - strand, within SO0440
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 463,774 + -0.9 463,775 - +0.8 463,791 + -0.7 463,810 + -1.3 463,990 + SO0438 0.17 -1.2 463,998 - SO0438 0.18 +0.2 464,053 + SO0438 0.24 +1.5 464,149 + SO0438 0.36 +0.9 464,258 + SO0438 0.50 +0.9 464,260 + SO0438 0.50 -0.6 464,291 + SO0438 0.54 +1.2 464,299 - SO0438 0.55 +0.3 464,299 - SO0438 0.55 +0.3 464,299 - SO0438 0.55 -0.4 464,299 - SO0438 0.55 -0.0 464,456 + SO0438 0.75 +1.1 464,481 + SO0438 0.78 -0.7 464,511 - SO0438 0.81 -0.2 464,593 + -0.3 464,601 - +1.1 464,601 - +1.2 464,646 + +0.3 464,914 + +0.9 464,916 + -0.5 464,946 + +1.5 465,059 - +1.1 465,082 - +0.2 465,107 + -1.3 465,107 + -0.2 465,108 + +1.0 465,108 + -0.8 465,116 - -0.4 465,116 - +0.7 465,175 + -0.8 465,228 - -0.1 465,273 - +0.7 465,316 - -2.4 465,507 + SO0440 0.15 +0.7 465,549 + SO0440 0.16 +2.3 465,649 - SO0440 0.19 -2.3 465,758 - SO0440 0.23 +0.4 465,777 + SO0440 0.23 +1.6 465,813 + SO0440 0.24 -1.2 465,813 + SO0440 0.24 +0.1 465,813 + SO0440 0.24 +0.1 465,890 - SO0440 0.27 +0.4
Or see this region's nucleotide sequence