Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0431 and acnB are separated by 421 nucleotides acnB and rsd are separated by 165 nucleotides
SO0431: SO0431 - HAD-superfamily hydrolase, subfamily IA, variant 3 protein family (NCBI ptt file), at 454,705 to 455,358
SO0431
SO0432: acnB - aconitate hydratase 2 (NCBI ptt file), at 455,780 to 458,377
acnB
SO0433: rsd - regulator of sigma D (NCBI ptt file), at 458,543 to 459,028
rsd
Position (kb) 455
456
457
458
459 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 454.784 kb on + strand, within SO0431 at 454.792 kb on - strand, within SO0431 at 454.916 kb on - strand, within SO0431 at 454.974 kb on + strand, within SO0431 at 454.974 kb on + strand, within SO0431 at 454.982 kb on - strand, within SO0431 at 454.982 kb on - strand, within SO0431 at 454.982 kb on - strand, within SO0431 at 454.992 kb on - strand, within SO0431 at 454.994 kb on + strand, within SO0431 at 454.994 kb on + strand, within SO0431 at 455.096 kb on - strand, within SO0431 at 455.160 kb on - strand, within SO0431 at 455.162 kb on + strand, within SO0431 at 455.162 kb on + strand, within SO0431 at 455.170 kb on - strand, within SO0431 at 455.286 kb on + strand, within SO0431 at 455.399 kb on + strand at 455.405 kb on + strand at 455.405 kb on + strand at 455.412 kb on - strand at 455.413 kb on - strand at 455.435 kb on + strand at 455.435 kb on - strand at 455.606 kb on + strand at 455.640 kb on + strand at 455.650 kb on + strand at 455.668 kb on + strand at 455.671 kb on + strand at 455.682 kb on - strand at 458.510 kb on + strand at 458.548 kb on - strand at 458.576 kb on + strand at 458.576 kb on + strand at 458.599 kb on + strand, within rsd at 458.624 kb on + strand, within rsd at 458.625 kb on + strand, within rsd at 458.655 kb on + strand, within rsd at 458.705 kb on + strand, within rsd at 458.713 kb on - strand, within rsd at 458.713 kb on - strand, within rsd at 458.713 kb on - strand, within rsd at 458.804 kb on + strand, within rsd at 458.812 kb on + strand, within rsd at 458.812 kb on + strand, within rsd at 458.812 kb on - strand, within rsd at 458.823 kb on + strand, within rsd at 458.867 kb on - strand, within rsd at 458.901 kb on + strand, within rsd at 458.901 kb on + strand, within rsd at 458.901 kb on + strand, within rsd at 458.903 kb on - strand, within rsd at 458.908 kb on - strand, within rsd at 458.970 kb on + strand, within rsd at 458.978 kb on - strand, within rsd at 459.058 kb on + strand at 459.058 kb on + strand at 459.086 kb on - strand at 459.204 kb on + strand at 459.204 kb on + strand at 459.212 kb on - strand at 459.248 kb on - strand at 459.250 kb on + strand at 459.277 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 454,784 + SO0431 0.12 +4.6 454,792 - SO0431 0.13 -0.8 454,916 - SO0431 0.32 +1.1 454,974 + SO0431 0.41 -0.7 454,974 + SO0431 0.41 -1.7 454,982 - SO0431 0.42 +0.5 454,982 - SO0431 0.42 -2.8 454,982 - SO0431 0.42 -1.5 454,992 - SO0431 0.44 +0.2 454,994 + SO0431 0.44 +0.4 454,994 + SO0431 0.44 -0.8 455,096 - SO0431 0.60 +0.2 455,160 - SO0431 0.70 -1.7 455,162 + SO0431 0.70 +0.9 455,162 + SO0431 0.70 -0.3 455,170 - SO0431 0.71 -2.8 455,286 + SO0431 0.89 +1.1 455,399 + +1.3 455,405 + -1.3 455,405 + +0.3 455,412 - +0.0 455,413 - +0.4 455,435 + -1.8 455,435 - -0.9 455,606 + -0.2 455,640 + -3.1 455,650 + +0.3 455,668 + -2.0 455,671 + +0.4 455,682 - -0.7 458,510 + -0.9 458,548 - +0.7 458,576 + +0.1 458,576 + -1.0 458,599 + rsd SO0433 0.12 -0.4 458,624 + rsd SO0433 0.17 -1.0 458,625 + rsd SO0433 0.17 -0.0 458,655 + rsd SO0433 0.23 +0.1 458,705 + rsd SO0433 0.33 -0.7 458,713 - rsd SO0433 0.35 -1.4 458,713 - rsd SO0433 0.35 -2.8 458,713 - rsd SO0433 0.35 +0.3 458,804 + rsd SO0433 0.54 -1.8 458,812 + rsd SO0433 0.55 -1.1 458,812 + rsd SO0433 0.55 +1.6 458,812 - rsd SO0433 0.55 -1.7 458,823 + rsd SO0433 0.58 -0.5 458,867 - rsd SO0433 0.67 -1.2 458,901 + rsd SO0433 0.74 +0.7 458,901 + rsd SO0433 0.74 -3.0 458,901 + rsd SO0433 0.74 -2.1 458,903 - rsd SO0433 0.74 -3.6 458,908 - rsd SO0433 0.75 -1.3 458,970 + rsd SO0433 0.88 +2.4 458,978 - rsd SO0433 0.90 +0.7 459,058 + +0.4 459,058 + +0.1 459,086 - -2.0 459,204 + -0.0 459,204 + +0.3 459,212 - -0.6 459,248 - -0.9 459,250 + +0.7 459,277 + -0.7
Or see this region's nucleotide sequence