Strain Fitness in Shewanella oneidensis MR-1 around SO0401

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfrdB and SO0400 are separated by 63 nucleotidesSO0400 and SO0401 overlap by 4 nucleotidesSO0401 and SO0402 are separated by 119 nucleotides SO0399: frdB - fumarate reductase iron-sulfur protein (NCBI ptt file), at 413,387 to 414,118 frdB SO0400: SO0400 - conserved hypothetical protein (NCBI ptt file), at 414,182 to 414,466 SO0400 SO0401: SO0401 - alcohol dehydrogenase, zinc-containing (NCBI ptt file), at 414,463 to 415,476 SO0401 SO0402: SO0402 - transcriptional regulator, LysR family (NCBI ptt file), at 415,596 to 416,525 SO0402 Position (kb) 414 415 416Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 413.573 kb on - strand, within frdBat 413.669 kb on - strand, within frdBat 413.750 kb on - strand, within frdBat 413.798 kb on - strand, within frdBat 413.845 kb on - strand, within frdBat 413.855 kb on - strand, within frdBat 413.861 kb on - strand, within frdBat 413.902 kb on - strand, within frdBat 414.008 kb on + strand, within frdBat 414.016 kb on - strand, within frdBat 414.056 kb on + strandat 414.056 kb on + strandat 414.064 kb on - strandat 414.178 kb on + strandat 414.204 kb on + strandat 414.246 kb on + strand, within SO0400at 414.261 kb on - strand, within SO0400at 414.317 kb on - strand, within SO0400at 414.372 kb on + strand, within SO0400at 414.412 kb on + strand, within SO0400at 414.419 kb on + strand, within SO0400at 414.509 kb on - strandat 414.565 kb on - strand, within SO0401at 414.636 kb on - strand, within SO0401at 414.668 kb on - strand, within SO0401at 414.679 kb on - strand, within SO0401at 414.681 kb on - strand, within SO0401at 414.728 kb on - strand, within SO0401at 414.848 kb on + strand, within SO0401at 414.848 kb on + strand, within SO0401at 414.856 kb on - strand, within SO0401at 414.894 kb on + strand, within SO0401at 414.910 kb on - strand, within SO0401at 414.910 kb on - strand, within SO0401at 414.954 kb on + strand, within SO0401at 414.954 kb on + strand, within SO0401at 414.954 kb on + strand, within SO0401at 414.954 kb on + strand, within SO0401at 414.962 kb on - strand, within SO0401at 414.962 kb on - strand, within SO0401at 414.962 kb on - strand, within SO0401at 415.092 kb on + strand, within SO0401at 415.092 kb on + strand, within SO0401at 415.100 kb on - strand, within SO0401at 415.102 kb on + strand, within SO0401at 415.116 kb on - strand, within SO0401at 415.125 kb on + strand, within SO0401at 415.132 kb on + strand, within SO0401at 415.133 kb on - strand, within SO0401at 415.138 kb on + strand, within SO0401at 415.139 kb on - strand, within SO0401at 415.165 kb on - strand, within SO0401at 415.369 kb on + strand, within SO0401at 415.463 kb on + strandat 415.506 kb on - strandat 415.543 kb on - strandat 415.556 kb on + strandat 415.756 kb on + strand, within SO0402at 415.756 kb on + strand, within SO0402at 415.756 kb on + strand, within SO0402at 415.756 kb on + strand, within SO0402at 415.756 kb on + strand, within SO0402at 415.756 kb on + strand, within SO0402at 415.756 kb on + strand, within SO0402at 415.756 kb on + strand, within SO0402at 415.756 kb on + strand, within SO0402at 415.756 kb on + strand, within SO0402at 415.756 kb on + strand, within SO0402at 415.756 kb on + strand, within SO0402at 415.756 kb on + strand, within SO0402at 415.756 kb on + strand, within SO0402at 415.756 kb on + strand, within SO0402at 415.756 kb on + strand, within SO0402at 415.764 kb on - strand, within SO0402at 415.764 kb on - strand, within SO0402at 415.764 kb on - strand, within SO0402at 415.764 kb on - strand, within SO0402at 415.764 kb on - strand, within SO0402at 415.764 kb on - strand, within SO0402at 415.764 kb on - strand, within SO0402at 415.764 kb on - strand, within SO0402at 415.764 kb on - strand, within SO0402at 415.764 kb on - strand, within SO0402at 415.764 kb on - strand, within SO0402at 415.764 kb on - strand, within SO0402at 415.764 kb on - strand, within SO0402at 415.770 kb on + strand, within SO0402at 415.770 kb on + strand, within SO0402at 415.794 kb on - strand, within SO0402at 415.859 kb on + strand, within SO0402at 415.870 kb on + strand, within SO0402at 415.870 kb on + strand, within SO0402at 415.870 kb on + strand, within SO0402at 415.870 kb on + strand, within SO0402at 415.870 kb on + strand, within SO0402at 415.870 kb on + strand, within SO0402at 415.870 kb on + strand, within SO0402at 415.870 kb on + strand, within SO0402at 415.878 kb on - strand, within SO0402at 415.878 kb on - strand, within SO0402at 415.878 kb on - strand, within SO0402at 415.878 kb on - strand, within SO0402at 415.878 kb on - strand, within SO0402at 415.878 kb on - strand, within SO0402at 415.878 kb on - strand, within SO0402at 416.021 kb on + strand, within SO0402at 416.026 kb on + strand, within SO0402at 416.026 kb on + strand, within SO0402at 416.026 kb on + strand, within SO0402at 416.029 kb on - strand, within SO0402at 416.034 kb on - strand, within SO0402at 416.034 kb on - strand, within SO0402at 416.034 kb on - strand, within SO0402at 416.063 kb on + strand, within SO0402at 416.124 kb on + strand, within SO0402at 416.131 kb on + strand, within SO0402at 416.131 kb on + strand, within SO0402at 416.139 kb on - strand, within SO0402at 416.139 kb on - strand, within SO0402at 416.150 kb on + strand, within SO0402at 416.185 kb on + strand, within SO0402at 416.214 kb on + strand, within SO0402at 416.214 kb on + strand, within SO0402at 416.284 kb on - strand, within SO0402at 416.284 kb on - strand, within SO0402at 416.298 kb on + strand, within SO0402at 416.298 kb on + strand, within SO0402at 416.336 kb on + strand, within SO0402at 416.410 kb on - strand, within SO0402at 416.410 kb on - strand, within SO0402

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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413,573 - frdB SO0399 0.25 -0.7
413,669 - frdB SO0399 0.39 +0.0
413,750 - frdB SO0399 0.50 +1.5
413,798 - frdB SO0399 0.56 -1.5
413,845 - frdB SO0399 0.63 -1.8
413,855 - frdB SO0399 0.64 -2.0
413,861 - frdB SO0399 0.65 +0.9
413,902 - frdB SO0399 0.70 -0.4
414,008 + frdB SO0399 0.85 -1.0
414,016 - frdB SO0399 0.86 -1.0
414,056 + -0.8
414,056 + +0.3
414,064 - +0.1
414,178 + +1.1
414,204 + +0.1
414,246 + SO0400 0.22 -1.3
414,261 - SO0400 0.28 +2.3
414,317 - SO0400 0.47 -1.4
414,372 + SO0400 0.67 -0.5
414,412 + SO0400 0.81 +0.5
414,419 + SO0400 0.83 -0.5
414,509 - +1.2
414,565 - SO0401 0.10 +1.2
414,636 - SO0401 0.17 -2.8
414,668 - SO0401 0.20 +2.7
414,679 - SO0401 0.21 +0.7
414,681 - SO0401 0.21 +0.6
414,728 - SO0401 0.26 -1.5
414,848 + SO0401 0.38 -0.9
414,848 + SO0401 0.38 +0.6
414,856 - SO0401 0.39 +0.3
414,894 + SO0401 0.43 -0.7
414,910 - SO0401 0.44 +0.4
414,910 - SO0401 0.44 +0.2
414,954 + SO0401 0.48 +0.9
414,954 + SO0401 0.48 +1.0
414,954 + SO0401 0.48 +0.2
414,954 + SO0401 0.48 -1.3
414,962 - SO0401 0.49 -0.8
414,962 - SO0401 0.49 -0.9
414,962 - SO0401 0.49 +0.4
415,092 + SO0401 0.62 -0.7
415,092 + SO0401 0.62 +0.2
415,100 - SO0401 0.63 +1.1
415,102 + SO0401 0.63 -0.7
415,116 - SO0401 0.64 +0.3
415,125 + SO0401 0.65 +0.6
415,132 + SO0401 0.66 +0.7
415,133 - SO0401 0.66 +1.0
415,138 + SO0401 0.67 -1.8
415,139 - SO0401 0.67 +0.2
415,165 - SO0401 0.69 -0.9
415,369 + SO0401 0.89 +0.3
415,463 + +0.2
415,506 - +1.3
415,543 - +0.9
415,556 + -0.4
415,756 + SO0402 0.17 -0.6
415,756 + SO0402 0.17 -0.0
415,756 + SO0402 0.17 -0.0
415,756 + SO0402 0.17 +0.5
415,756 + SO0402 0.17 +1.3
415,756 + SO0402 0.17 +1.7
415,756 + SO0402 0.17 -0.3
415,756 + SO0402 0.17 +0.8
415,756 + SO0402 0.17 +0.3
415,756 + SO0402 0.17 +0.3
415,756 + SO0402 0.17 +0.2
415,756 + SO0402 0.17 -0.2
415,756 + SO0402 0.17 +0.0
415,756 + SO0402 0.17 -1.3
415,756 + SO0402 0.17 -1.5
415,756 + SO0402 0.17 +1.5
415,764 - SO0402 0.18 +1.0
415,764 - SO0402 0.18 +0.2
415,764 - SO0402 0.18 +1.5
415,764 - SO0402 0.18 -0.7
415,764 - SO0402 0.18 -0.9
415,764 - SO0402 0.18 +0.5
415,764 - SO0402 0.18 -0.8
415,764 - SO0402 0.18 +0.1
415,764 - SO0402 0.18 -2.2
415,764 - SO0402 0.18 +1.6
415,764 - SO0402 0.18 -0.6
415,764 - SO0402 0.18 +0.0
415,764 - SO0402 0.18 -1.4
415,770 + SO0402 0.19 -1.0
415,770 + SO0402 0.19 +0.7
415,794 - SO0402 0.21 +0.1
415,859 + SO0402 0.28 +1.2
415,870 + SO0402 0.29 -0.9
415,870 + SO0402 0.29 -1.6
415,870 + SO0402 0.29 +0.3
415,870 + SO0402 0.29 +0.3
415,870 + SO0402 0.29 +0.9
415,870 + SO0402 0.29 -0.5
415,870 + SO0402 0.29 +0.8
415,870 + SO0402 0.29 -1.0
415,878 - SO0402 0.30 -0.9
415,878 - SO0402 0.30 +0.6
415,878 - SO0402 0.30 -0.5
415,878 - SO0402 0.30 -0.0
415,878 - SO0402 0.30 -0.0
415,878 - SO0402 0.30 +1.2
415,878 - SO0402 0.30 +0.1
416,021 + SO0402 0.46 +0.1
416,026 + SO0402 0.46 +1.6
416,026 + SO0402 0.46 -1.2
416,026 + SO0402 0.46 -0.3
416,029 - SO0402 0.47 -2.1
416,034 - SO0402 0.47 -1.0
416,034 - SO0402 0.47 +0.6
416,034 - SO0402 0.47 +2.0
416,063 + SO0402 0.50 +1.6
416,124 + SO0402 0.57 -2.0
416,131 + SO0402 0.58 -0.0
416,131 + SO0402 0.58 -0.8
416,139 - SO0402 0.58 -0.4
416,139 - SO0402 0.58 -0.8
416,150 + SO0402 0.60 +0.7
416,185 + SO0402 0.63 -0.4
416,214 + SO0402 0.66 +0.1
416,214 + SO0402 0.66 +1.8
416,284 - SO0402 0.74 +0.6
416,284 - SO0402 0.74 +1.1
416,298 + SO0402 0.75 +0.8
416,298 + SO0402 0.75 +0.6
416,336 + SO0402 0.80 -2.3
416,410 - SO0402 0.88 +0.3
416,410 - SO0402 0.88 -0.1

Or see this region's nucleotide sequence