Strain Fitness in Shewanella oneidensis MR-1 around SO0374

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO_0373 and SO0374 overlap by 28 nucleotidesSO0374 and SO0375 are separated by 59 nucleotidesSO0375 and SO_0376 are separated by 232 nucleotides SO_0373: SO_0373 - no description, at 386,192 to 387,124 _0373 SO0374: SO0374 - ISSod1, transposase OrfB (NCBI ptt file), at 387,097 to 387,906 SO0374 SO0375: SO0375 - ISSod1, transposase OrfA (NCBI ptt file), at 387,966 to 388,256 SO0375 SO_0376: SO_0376 - no description, at 388,489 to 388,770 _0376 Position (kb) 387 388Strain fitness (log2 ratio) -3 -2 -1 0 1at 386.267 kb on - strandat 386.269 kb on - strandat 386.334 kb on - strand, within SO_0373at 386.358 kb on - strand, within SO_0373at 386.359 kb on - strand, within SO_0373at 386.387 kb on + strand, within SO_0373at 386.394 kb on + strand, within SO_0373at 386.394 kb on + strand, within SO_0373at 386.396 kb on - strand, within SO_0373at 386.402 kb on - strand, within SO_0373at 386.404 kb on - strand, within SO_0373at 386.540 kb on + strand, within SO_0373at 386.548 kb on - strand, within SO_0373at 386.595 kb on - strand, within SO_0373at 386.622 kb on - strand, within SO_0373at 386.692 kb on + strand, within SO_0373at 386.700 kb on - strand, within SO_0373at 386.723 kb on + strand, within SO_0373at 386.731 kb on - strand, within SO_0373at 386.747 kb on - strand, within SO_0373at 386.767 kb on + strand, within SO_0373at 386.767 kb on + strand, within SO_0373at 386.767 kb on + strand, within SO_0373at 386.767 kb on + strand, within SO_0373at 386.782 kb on + strand, within SO_0373at 386.790 kb on - strand, within SO_0373at 386.825 kb on + strand, within SO_0373at 386.843 kb on - strand, within SO_0373at 386.854 kb on - strand, within SO_0373at 386.867 kb on - strand, within SO_0373at 386.889 kb on + strand, within SO_0373at 386.915 kb on - strand, within SO_0373at 387.093 kb on - strandat 387.093 kb on - strandat 387.103 kb on - strandat 388.309 kb on + strandat 388.309 kb on + strandat 388.309 kb on + strandat 388.309 kb on + strandat 388.309 kb on + strandat 388.309 kb on + strandat 388.309 kb on + strandat 388.309 kb on + strandat 388.309 kb on + strandat 388.314 kb on + strandat 388.327 kb on + strandat 388.341 kb on - strandat 388.349 kb on - strandat 388.351 kb on + strandat 388.351 kb on + strandat 388.359 kb on - strandat 388.359 kb on - strandat 388.466 kb on - strandat 388.468 kb on + strandat 388.468 kb on + strandat 388.476 kb on - strandat 388.476 kb on - strandat 388.476 kb on - strandat 388.527 kb on + strand, within SO_0376at 388.527 kb on + strand, within SO_0376at 388.527 kb on + strand, within SO_0376at 388.535 kb on - strand, within SO_0376at 388.535 kb on - strand, within SO_0376at 388.537 kb on + strand, within SO_0376at 388.600 kb on + strand, within SO_0376at 388.600 kb on + strand, within SO_0376at 388.607 kb on + strand, within SO_0376at 388.607 kb on - strand, within SO_0376at 388.625 kb on + strand, within SO_0376at 388.668 kb on + strand, within SO_0376at 388.690 kb on + strand, within SO_0376at 388.870 kb on + strandat 388.877 kb on + strandat 388.895 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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386,267 - -0.0
386,269 - +0.9
386,334 - SO_0373 0.15 -2.6
386,358 - SO_0373 0.18 -0.1
386,359 - SO_0373 0.18 +1.4
386,387 + SO_0373 0.21 -1.3
386,394 + SO_0373 0.22 -3.1
386,394 + SO_0373 0.22 -0.5
386,396 - SO_0373 0.22 -0.1
386,402 - SO_0373 0.23 +0.8
386,404 - SO_0373 0.23 -1.2
386,540 + SO_0373 0.37 +0.1
386,548 - SO_0373 0.38 +1.3
386,595 - SO_0373 0.43 +1.1
386,622 - SO_0373 0.46 +0.5
386,692 + SO_0373 0.54 +0.8
386,700 - SO_0373 0.54 +0.5
386,723 + SO_0373 0.57 -1.0
386,731 - SO_0373 0.58 +0.4
386,747 - SO_0373 0.59 -0.7
386,767 + SO_0373 0.62 +0.3
386,767 + SO_0373 0.62 +0.8
386,767 + SO_0373 0.62 +0.2
386,767 + SO_0373 0.62 +0.1
386,782 + SO_0373 0.63 +0.9
386,790 - SO_0373 0.64 +0.7
386,825 + SO_0373 0.68 -0.3
386,843 - SO_0373 0.70 +0.9
386,854 - SO_0373 0.71 +0.5
386,867 - SO_0373 0.72 +1.1
386,889 + SO_0373 0.75 +1.1
386,915 - SO_0373 0.77 -0.6
387,093 - -0.7
387,093 - +0.1
387,103 - -0.3
388,309 + -0.1
388,309 + -1.8
388,309 + -0.4
388,309 + +1.5
388,309 + -0.5
388,309 + +0.3
388,309 + +1.0
388,309 + +0.2
388,309 + -1.0
388,314 + +0.6
388,327 + -0.0
388,341 - -0.2
388,349 - -1.2
388,351 + +0.8
388,351 + -0.9
388,359 - +0.9
388,359 - -0.5
388,466 - -0.4
388,468 + -2.8
388,468 + -0.0
388,476 - -0.1
388,476 - +0.4
388,476 - -2.9
388,527 + SO_0376 0.13 -0.3
388,527 + SO_0376 0.13 -0.2
388,527 + SO_0376 0.13 +0.2
388,535 - SO_0376 0.16 -0.9
388,535 - SO_0376 0.16 -0.9
388,537 + SO_0376 0.17 +0.9
388,600 + SO_0376 0.39 +1.4
388,600 + SO_0376 0.39 +0.8
388,607 + SO_0376 0.42 -0.1
388,607 - SO_0376 0.42 +0.2
388,625 + SO_0376 0.48 -0.4
388,668 + SO_0376 0.63 -1.0
388,690 + SO_0376 0.71 -1.5
388,870 + +0.0
388,877 + -0.9
388,895 - +1.5

Or see this region's nucleotide sequence