Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0295 and SO0296 are separated by 108 nucleotides SO0296 and SO0297 are separated by 18 nucleotides SO0297 and gmhA overlap by 4 nucleotides
SO0295: SO0295 - transcriptional regulator, LysR family (NCBI ptt file), at 301,109 to 301,993
SO0295
SO0296: SO0296 - integral membrane domain protein (NCBI ptt file), at 302,102 to 303,025
SO0296
SO0297: SO0297 - lipoprotein, putative (NCBI ptt file), at 303,044 to 303,610
SO0297
SO0298: gmhA - phosphoheptose isomerase (NCBI ptt file), at 303,607 to 304,200
gmhA
Position (kb) 302
303
304 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 301.108 kb on - strand at 301.147 kb on + strand at 301.164 kb on - strand at 301.242 kb on - strand, within SO0295 at 301.462 kb on + strand, within SO0295 at 301.474 kb on + strand, within SO0295 at 301.482 kb on - strand, within SO0295 at 301.510 kb on + strand, within SO0295 at 301.582 kb on + strand, within SO0295 at 301.590 kb on - strand, within SO0295 at 301.615 kb on + strand, within SO0295 at 301.652 kb on + strand, within SO0295 at 301.675 kb on + strand, within SO0295 at 301.685 kb on + strand, within SO0295 at 301.685 kb on + strand, within SO0295 at 301.690 kb on - strand, within SO0295 at 301.695 kb on + strand, within SO0295 at 301.703 kb on - strand, within SO0295 at 301.873 kb on + strand, within SO0295 at 301.876 kb on - strand, within SO0295 at 301.893 kb on - strand, within SO0295 at 302.109 kb on + strand at 302.176 kb on + strand at 302.305 kb on + strand, within SO0296 at 302.305 kb on + strand, within SO0296 at 302.305 kb on + strand, within SO0296 at 302.313 kb on - strand, within SO0296 at 302.322 kb on - strand, within SO0296 at 302.332 kb on - strand, within SO0296 at 302.366 kb on - strand, within SO0296 at 302.368 kb on + strand, within SO0296 at 302.368 kb on + strand, within SO0296 at 302.376 kb on - strand, within SO0296 at 302.376 kb on - strand, within SO0296 at 302.444 kb on - strand, within SO0296 at 302.449 kb on + strand, within SO0296 at 302.449 kb on + strand, within SO0296 at 302.449 kb on + strand, within SO0296 at 302.477 kb on + strand, within SO0296 at 302.505 kb on + strand, within SO0296 at 302.505 kb on + strand, within SO0296 at 302.529 kb on + strand, within SO0296 at 302.529 kb on + strand, within SO0296 at 302.537 kb on - strand, within SO0296 at 302.537 kb on - strand, within SO0296 at 302.601 kb on + strand, within SO0296 at 302.623 kb on - strand, within SO0296 at 302.675 kb on + strand, within SO0296 at 302.691 kb on - strand, within SO0296 at 302.697 kb on + strand, within SO0296 at 302.697 kb on + strand, within SO0296 at 302.707 kb on + strand, within SO0296 at 302.715 kb on - strand, within SO0296 at 302.722 kb on + strand, within SO0296 at 302.728 kb on - strand, within SO0296 at 302.752 kb on - strand, within SO0296 at 302.767 kb on + strand, within SO0296 at 302.862 kb on + strand, within SO0296 at 302.999 kb on + strand at 303.001 kb on + strand at 303.020 kb on + strand at 303.021 kb on - strand at 303.021 kb on - strand at 303.111 kb on + strand, within SO0297 at 303.124 kb on - strand, within SO0297 at 303.190 kb on + strand, within SO0297 at 303.313 kb on + strand, within SO0297 at 303.339 kb on + strand, within SO0297 at 303.360 kb on - strand, within SO0297 at 303.550 kb on - strand, within SO0297 at 303.566 kb on - strand at 303.600 kb on + strand at 303.799 kb on + strand, within gmhA at 303.809 kb on + strand, within gmhA
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 301,108 - +1.2 301,147 + +0.9 301,164 - +0.7 301,242 - SO0295 0.15 -1.9 301,462 + SO0295 0.40 -0.5 301,474 + SO0295 0.41 +2.5 301,482 - SO0295 0.42 -0.7 301,510 + SO0295 0.45 +0.5 301,582 + SO0295 0.53 -0.6 301,590 - SO0295 0.54 -0.9 301,615 + SO0295 0.57 +0.3 301,652 + SO0295 0.61 -2.3 301,675 + SO0295 0.64 +0.1 301,685 + SO0295 0.65 +2.6 301,685 + SO0295 0.65 +0.3 301,690 - SO0295 0.66 -0.1 301,695 + SO0295 0.66 -1.0 301,703 - SO0295 0.67 -0.8 301,873 + SO0295 0.86 +0.7 301,876 - SO0295 0.87 -1.1 301,893 - SO0295 0.89 +1.1 302,109 + +1.6 302,176 + -0.2 302,305 + SO0296 0.22 +0.4 302,305 + SO0296 0.22 -2.1 302,305 + SO0296 0.22 +0.8 302,313 - SO0296 0.23 +0.5 302,322 - SO0296 0.24 -0.9 302,332 - SO0296 0.25 -0.8 302,366 - SO0296 0.29 +1.9 302,368 + SO0296 0.29 +1.4 302,368 + SO0296 0.29 -0.3 302,376 - SO0296 0.30 +0.3 302,376 - SO0296 0.30 +2.5 302,444 - SO0296 0.37 +0.2 302,449 + SO0296 0.38 +0.8 302,449 + SO0296 0.38 +2.1 302,449 + SO0296 0.38 +1.6 302,477 + SO0296 0.41 -2.3 302,505 + SO0296 0.44 -0.9 302,505 + SO0296 0.44 -1.2 302,529 + SO0296 0.46 +0.7 302,529 + SO0296 0.46 +1.7 302,537 - SO0296 0.47 +0.1 302,537 - SO0296 0.47 +0.2 302,601 + SO0296 0.54 +1.6 302,623 - SO0296 0.56 -0.6 302,675 + SO0296 0.62 -0.3 302,691 - SO0296 0.64 +1.0 302,697 + SO0296 0.64 -0.2 302,697 + SO0296 0.64 +0.6 302,707 + SO0296 0.65 +0.8 302,715 - SO0296 0.66 +0.5 302,722 + SO0296 0.67 -0.2 302,728 - SO0296 0.68 +0.2 302,752 - SO0296 0.70 -1.1 302,767 + SO0296 0.72 -0.6 302,862 + SO0296 0.82 -1.0 302,999 + -0.1 303,001 + -1.6 303,020 + -1.3 303,021 - +1.6 303,021 - -0.9 303,111 + SO0297 0.12 -0.0 303,124 - SO0297 0.14 -1.6 303,190 + SO0297 0.26 -2.3 303,313 + SO0297 0.47 +0.5 303,339 + SO0297 0.52 -1.6 303,360 - SO0297 0.56 -0.8 303,550 - SO0297 0.89 -2.5 303,566 - +1.2 303,600 + +0.1 303,799 + gmhA SO0298 0.32 -3.1 303,809 + gmhA SO0298 0.34 -1.3
Or see this region's nucleotide sequence