Strain Fitness in Shewanella oneidensis MR-1 around SO0182

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0181 and SO0182 are separated by 111 nucleotidesSO0182 and SO0183 overlap by 4 nucleotidesSO0183 and SO0184 are separated by 85 nucleotides SO0181: SO0181 - hypothetical protein (NCBI ptt file), at 186,395 to 187,441 SO0181 SO0182: SO0182 - hypothetical protein (NCBI ptt file), at 187,553 to 187,840 SO0182 SO0183: SO0183 - acetyltransferase, GNAT family (NCBI ptt file), at 187,837 to 188,319 SO0183 SO0184: SO0184 - hypothetical microcystin dependent protein (NCBI ptt file), at 188,405 to 188,956 SO0184 Position (kb) 187 188Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 186.566 kb on + strand, within SO0181at 186.566 kb on + strand, within SO0181at 186.566 kb on + strand, within SO0181at 186.566 kb on + strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.674 kb on + strand, within SO0181at 186.682 kb on - strand, within SO0181at 186.761 kb on + strand, within SO0181at 186.785 kb on - strand, within SO0181at 186.785 kb on - strandat 186.799 kb on - strand, within SO0181at 186.808 kb on + strand, within SO0181at 186.820 kb on - strand, within SO0181at 186.844 kb on - strand, within SO0181at 186.847 kb on + strand, within SO0181at 186.861 kb on - strand, within SO0181at 186.910 kb on + strand, within SO0181at 186.923 kb on - strand, within SO0181at 186.995 kb on + strand, within SO0181at 186.995 kb on - strand, within SO0181at 187.039 kb on - strand, within SO0181at 187.151 kb on + strand, within SO0181at 187.151 kb on - strand, within SO0181at 187.168 kb on + strand, within SO0181at 187.176 kb on + strand, within SO0181at 187.190 kb on - strand, within SO0181at 187.205 kb on - strand, within SO0181at 187.205 kb on - strand, within SO0181at 187.218 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.283 kb on - strand, within SO0181at 187.284 kb on - strand, within SO0181at 187.284 kb on - strand, within SO0181at 187.284 kb on - strand, within SO0181at 187.321 kb on + strand, within SO0181at 187.321 kb on + strand, within SO0181at 187.321 kb on + strand, within SO0181at 187.321 kb on + strand, within SO0181at 187.321 kb on + strand, within SO0181at 187.342 kb on - strandat 187.347 kb on - strandat 187.350 kb on - strandat 187.350 kb on - strandat 187.399 kb on + strandat 187.407 kb on - strandat 187.623 kb on - strand, within SO0182at 187.658 kb on - strand, within SO0182at 187.662 kb on + strand, within SO0182at 187.672 kb on - strand, within SO0182at 187.673 kb on + strand, within SO0182at 187.689 kb on + strand, within SO0182at 187.689 kb on + strand, within SO0182at 187.689 kb on + strand, within SO0182at 187.697 kb on + strand, within SO0182at 187.697 kb on - strand, within SO0182at 187.697 kb on - strand, within SO0182at 187.699 kb on + strand, within SO0182at 187.699 kb on + strand, within SO0182at 187.707 kb on - strand, within SO0182at 187.707 kb on - strand, within SO0182at 187.707 kb on - strand, within SO0182at 187.730 kb on + strand, within SO0182at 187.730 kb on + strand, within SO0182at 187.730 kb on + strand, within SO0182at 187.738 kb on - strand, within SO0182at 187.738 kb on - strand, within SO0182at 187.756 kb on + strand, within SO0182at 187.760 kb on + strand, within SO0182at 187.835 kb on + strandat 187.835 kb on + strandat 187.835 kb on + strandat 187.835 kb on + strandat 187.858 kb on - strandat 187.860 kb on + strandat 187.860 kb on + strandat 187.860 kb on + strandat 187.867 kb on - strandat 187.867 kb on - strandat 187.867 kb on - strandat 187.867 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.917 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.924 kb on + strand, within SO0183at 187.927 kb on + strand, within SO0183at 187.927 kb on + strand, within SO0183at 187.927 kb on + strand, within SO0183at 187.927 kb on + strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.932 kb on - strandat 187.935 kb on - strand, within SO0183at 187.935 kb on - strand, within SO0183at 187.935 kb on - strand, within SO0183at 187.935 kb on - strand, within SO0183at 187.935 kb on - strand, within SO0183at 188.027 kb on + strand, within SO0183at 188.038 kb on + strand, within SO0183at 188.046 kb on - strand, within SO0183at 188.046 kb on - strand, within SO0183at 188.046 kb on - strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.138 kb on + strand, within SO0183at 188.139 kb on - strand, within SO0183at 188.139 kb on - strand, within SO0183at 188.142 kb on - strand, within SO0183at 188.142 kb on - strand, within SO0183at 188.142 kb on - strand, within SO0183at 188.144 kb on - strand, within SO0183at 188.147 kb on - strand, within SO0183at 188.151 kb on + strand, within SO0183at 188.157 kb on - strand, within SO0183at 188.160 kb on - strand, within SO0183at 188.203 kb on + strand, within SO0183at 188.234 kb on + strand, within SO0183at 188.242 kb on - strand, within SO0183at 188.243 kb on + strand, within SO0183at 188.265 kb on + strand, within SO0183at 188.290 kb on + strandat 188.315 kb on + strandat 188.323 kb on - strandat 188.323 kb on - strandat 188.323 kb on - strandat 188.329 kb on - strandat 188.331 kb on + strandat 188.388 kb on + strandat 188.388 kb on + strandat 188.388 kb on + strandat 188.396 kb on - strandat 188.442 kb on - strandat 188.442 kb on - strandat 188.453 kb on + strandat 188.453 kb on + strandat 188.453 kb on + strandat 188.459 kb on + strandat 188.461 kb on - strand, within SO0184at 188.478 kb on - strand, within SO0184at 188.525 kb on + strand, within SO0184at 188.528 kb on + strand, within SO0184at 188.533 kb on + strand, within SO0184at 188.541 kb on - strand, within SO0184at 188.564 kb on - strand, within SO0184at 188.701 kb on + strand, within SO0184at 188.701 kb on - strand, within SO0184at 188.737 kb on + strand, within SO0184at 188.744 kb on - strand, within SO0184at 188.744 kb on - strand, within SO0184at 188.745 kb on - strand, within SO0184at 188.746 kb on - strand, within SO0184at 188.766 kb on + strand, within SO0184at 188.771 kb on + strand, within SO0184at 188.779 kb on - strand, within SO0184at 188.813 kb on - strand, within SO0184at 188.815 kb on + strand, within SO0184at 188.815 kb on + strand, within SO0184at 188.823 kb on - strand, within SO0184at 188.823 kb on - strand, within SO0184at 188.828 kb on + strand, within SO0184

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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186,566 + SO0181 0.16 +0.1
186,566 + SO0181 0.16 -0.3
186,566 + SO0181 0.16 +0.7
186,566 + SO0181 0.16 +0.6
186,574 - SO0181 0.17 +0.4
186,574 - SO0181 0.17 -1.9
186,574 - SO0181 0.17 +0.1
186,574 - SO0181 0.17 -0.7
186,574 - SO0181 0.17 +1.5
186,574 - SO0181 0.17 +0.0
186,574 - SO0181 0.17 +0.9
186,574 - SO0181 0.17 -1.9
186,674 + SO0181 0.27 +1.1
186,682 - SO0181 0.27 +1.0
186,761 + SO0181 0.35 -1.1
186,785 - SO0181 0.37 -0.9
186,785 - +0.5
186,799 - SO0181 0.39 +0.4
186,808 + SO0181 0.39 -2.2
186,820 - SO0181 0.41 -0.9
186,844 - SO0181 0.43 -0.2
186,847 + SO0181 0.43 +0.3
186,861 - SO0181 0.45 -1.3
186,910 + SO0181 0.49 +2.3
186,923 - SO0181 0.50 -0.2
186,995 + SO0181 0.57 -0.6
186,995 - SO0181 0.57 -2.6
187,039 - SO0181 0.62 +0.7
187,151 + SO0181 0.72 +2.1
187,151 - SO0181 0.72 +0.1
187,168 + SO0181 0.74 -0.2
187,176 + SO0181 0.75 -0.3
187,190 - SO0181 0.76 -0.5
187,205 - SO0181 0.77 -2.3
187,205 - SO0181 0.77 -0.2
187,218 + SO0181 0.79 +0.2
187,276 + SO0181 0.84 +0.1
187,276 + SO0181 0.84 -0.3
187,276 + SO0181 0.84 -0.3
187,276 + SO0181 0.84 -1.7
187,276 + SO0181 0.84 +1.1
187,276 + SO0181 0.84 +1.6
187,276 + SO0181 0.84 +0.1
187,283 - SO0181 0.85 -0.4
187,284 - SO0181 0.85 -0.6
187,284 - SO0181 0.85 +0.2
187,284 - SO0181 0.85 -0.1
187,321 + SO0181 0.88 +2.5
187,321 + SO0181 0.88 +0.7
187,321 + SO0181 0.88 +0.7
187,321 + SO0181 0.88 -0.3
187,321 + SO0181 0.88 -1.1
187,342 - -0.6
187,347 - -1.0
187,350 - +1.0
187,350 - +0.5
187,399 + -0.1
187,407 - +2.0
187,623 - SO0182 0.24 +0.4
187,658 - SO0182 0.36 +1.4
187,662 + SO0182 0.38 +0.6
187,672 - SO0182 0.41 +1.2
187,673 + SO0182 0.42 +0.2
187,689 + SO0182 0.47 -2.1
187,689 + SO0182 0.47 +0.4
187,689 + SO0182 0.47 +0.2
187,697 + SO0182 0.50 -2.1
187,697 - SO0182 0.50 +0.1
187,697 - SO0182 0.50 +3.0
187,699 + SO0182 0.51 +0.2
187,699 + SO0182 0.51 -0.7
187,707 - SO0182 0.53 +1.1
187,707 - SO0182 0.53 -0.2
187,707 - SO0182 0.53 -1.2
187,730 + SO0182 0.61 +0.7
187,730 + SO0182 0.61 -1.2
187,730 + SO0182 0.61 -0.3
187,738 - SO0182 0.64 -0.1
187,738 - SO0182 0.64 +0.1
187,756 + SO0182 0.70 -0.1
187,760 + SO0182 0.72 -1.1
187,835 + +1.8
187,835 + +0.8
187,835 + +0.2
187,835 + -0.9
187,858 - +0.3
187,860 + +1.7
187,860 + -0.9
187,860 + -0.4
187,867 - -1.1
187,867 - -1.1
187,867 - -0.9
187,867 - -0.6
187,868 - +1.8
187,868 - -0.2
187,868 - +0.9
187,868 - +0.1
187,868 - +0.7
187,868 - +0.1
187,868 - -0.7
187,868 - +0.7
187,868 - -0.1
187,917 + SO0183 0.17 +0.6
187,922 + SO0183 0.18 -0.4
187,922 + SO0183 0.18 -3.0
187,922 + SO0183 0.18 -1.1
187,922 + SO0183 0.18 -0.8
187,922 + SO0183 0.18 +0.8
187,922 + SO0183 0.18 +1.4
187,922 + SO0183 0.18 -0.2
187,922 + SO0183 0.18 +0.5
187,922 + SO0183 0.18 +0.0
187,922 + SO0183 0.18 +0.6
187,924 + SO0183 0.18 +0.0
187,927 + SO0183 0.19 +0.6
187,927 + SO0183 0.19 -0.4
187,927 + SO0183 0.19 +1.3
187,927 + SO0183 0.19 -0.1
187,930 - SO0183 0.19 -2.6
187,930 - SO0183 0.19 -1.3
187,930 - SO0183 0.19 +1.0
187,930 - SO0183 0.19 +1.0
187,930 - SO0183 0.19 -0.6
187,930 - SO0183 0.19 +1.0
187,930 - SO0183 0.19 -0.1
187,930 - SO0183 0.19 +1.3
187,930 - SO0183 0.19 -0.5
187,932 - +0.9
187,935 - SO0183 0.20 +0.5
187,935 - SO0183 0.20 -1.9
187,935 - SO0183 0.20 +0.1
187,935 - SO0183 0.20 +0.0
187,935 - SO0183 0.20 +0.6
188,027 + SO0183 0.39 +0.8
188,038 + SO0183 0.42 -1.2
188,046 - SO0183 0.43 -2.4
188,046 - SO0183 0.43 -1.8
188,046 - SO0183 0.43 +0.1
188,129 + SO0183 0.60 +0.2
188,129 + SO0183 0.60 +3.8
188,129 + SO0183 0.60 +2.2
188,129 + SO0183 0.60 -1.8
188,129 + SO0183 0.60 -0.8
188,129 + SO0183 0.60 -1.9
188,129 + SO0183 0.60 -0.6
188,129 + SO0183 0.60 -0.1
188,129 + SO0183 0.60 +0.5
188,129 + SO0183 0.60 -0.7
188,129 + SO0183 0.60 +1.2
188,129 + SO0183 0.60 -0.2
188,129 + SO0183 0.60 -1.1
188,129 + SO0183 0.60 +0.1
188,129 + SO0183 0.60 -1.2
188,129 + SO0183 0.60 +0.7
188,129 + SO0183 0.60 +1.2
188,129 + SO0183 0.60 -0.1
188,129 + SO0183 0.60 +3.2
188,129 + SO0183 0.60 -1.3
188,137 - SO0183 0.62 -2.2
188,137 - SO0183 0.62 +0.3
188,137 - SO0183 0.62 +0.6
188,137 - SO0183 0.62 +0.0
188,137 - SO0183 0.62 -0.7
188,137 - SO0183 0.62 -1.2
188,137 - SO0183 0.62 +0.6
188,137 - SO0183 0.62 -1.1
188,137 - SO0183 0.62 +0.3
188,137 - SO0183 0.62 +0.2
188,138 + SO0183 0.62 -0.9
188,139 - SO0183 0.63 -2.1
188,139 - SO0183 0.63 -1.1
188,142 - SO0183 0.63 -0.9
188,142 - SO0183 0.63 -0.9
188,142 - SO0183 0.63 +1.6
188,144 - SO0183 0.64 -1.4
188,147 - SO0183 0.64 -0.2
188,151 + SO0183 0.65 -0.1
188,157 - SO0183 0.66 -0.2
188,160 - SO0183 0.67 +0.1
188,203 + SO0183 0.76 -1.8
188,234 + SO0183 0.82 -0.8
188,242 - SO0183 0.84 +0.2
188,243 + SO0183 0.84 -0.4
188,265 + SO0183 0.89 +0.5
188,290 + -1.4
188,315 + +2.5
188,323 - +0.3
188,323 - -0.9
188,323 - +1.1
188,329 - -2.2
188,331 + -0.2
188,388 + +0.7
188,388 + -0.9
188,388 + +0.2
188,396 - +0.6
188,442 - -0.1
188,442 - +2.8
188,453 + +1.8
188,453 + +0.5
188,453 + +0.3
188,459 + -0.9
188,461 - SO0184 0.10 +2.5
188,478 - SO0184 0.13 -1.4
188,525 + SO0184 0.22 -0.6
188,528 + SO0184 0.22 -0.1
188,533 + SO0184 0.23 +0.2
188,541 - SO0184 0.25 +2.6
188,564 - SO0184 0.29 -0.4
188,701 + SO0184 0.54 +0.8
188,701 - SO0184 0.54 -1.1
188,737 + SO0184 0.60 -2.0
188,744 - SO0184 0.61 -0.0
188,744 - SO0184 0.61 -0.8
188,745 - SO0184 0.62 +1.5
188,746 - SO0184 0.62 -0.6
188,766 + SO0184 0.65 -0.7
188,771 + SO0184 0.66 -0.7
188,779 - SO0184 0.68 +1.4
188,813 - SO0184 0.74 +0.1
188,815 + SO0184 0.74 +0.8
188,815 + SO0184 0.74 +1.2
188,823 - SO0184 0.76 -0.6
188,823 - SO0184 0.76 -1.7
188,828 + SO0184 0.77 -1.5

Or see this region's nucleotide sequence