Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0131 and SO0132 are separated by 101 nucleotides SO0132 and SO_0134 are separated by 230 nucleotides SO_0134 and SO0135 are separated by 42 nucleotides SO0135 and SO0136 are separated by 26 nucleotides
SO0131: SO0131 - hypothetical chorismate pyruvate lyase (NCBI ptt file), at 140,071 to 140,640
SO0131
SO0132: SO0132 - flagellar protein FliL, putative (NCBI ptt file), at 140,742 to 141,152
SO0132
SO_0134: SO_0134 - putative SAM-dependent methyltransferase (RefSeq), at 141,383 to 142,309
_0134
SO0135: SO0135 - hemolysin protein, putative (NCBI ptt file), at 142,352 to 142,642
SO0135
SO0136: SO0136 - hypothetical protein (NCBI ptt file), at 142,669 to 143,331
SO0136
Position (kb) 141
142
143 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 140.398 kb on + strand, within SO0131 at 140.398 kb on + strand, within SO0131 at 140.398 kb on + strand, within SO0131 at 140.398 kb on + strand, within SO0131 at 140.398 kb on + strand, within SO0131 at 140.398 kb on + strand, within SO0131 at 140.398 kb on + strand, within SO0131 at 140.398 kb on + strand, within SO0131 at 140.398 kb on + strand, within SO0131 at 140.406 kb on - strand, within SO0131 at 140.406 kb on - strand, within SO0131 at 140.501 kb on - strand, within SO0131 at 140.501 kb on - strand, within SO0131 at 140.628 kb on - strand at 140.729 kb on + strand at 140.729 kb on + strand at 140.779 kb on + strand at 140.781 kb on + strand at 140.781 kb on + strand at 140.786 kb on + strand, within SO0132 at 140.786 kb on + strand, within SO0132 at 140.789 kb on - strand, within SO0132 at 140.789 kb on - strand, within SO0132 at 140.794 kb on - strand, within SO0132 at 140.963 kb on + strand, within SO0132 at 140.971 kb on - strand, within SO0132 at 141.005 kb on - strand, within SO0132 at 141.045 kb on + strand, within SO0132 at 141.074 kb on + strand, within SO0132 at 141.101 kb on + strand, within SO0132 at 141.101 kb on + strand, within SO0132 at 141.101 kb on + strand, within SO0132 at 141.141 kb on - strand at 141.141 kb on - strand at 141.225 kb on + strand at 141.285 kb on - strand at 141.319 kb on + strand at 141.374 kb on - strand at 141.441 kb on - strand at 141.585 kb on + strand, within SO_0134 at 141.661 kb on + strand, within SO_0134 at 141.716 kb on - strand, within SO_0134 at 141.716 kb on - strand, within SO_0134 at 141.781 kb on + strand, within SO_0134 at 141.888 kb on + strand, within SO_0134 at 141.895 kb on - strand, within SO_0134 at 141.934 kb on + strand, within SO_0134 at 141.956 kb on - strand, within SO_0134 at 141.956 kb on - strand, within SO_0134 at 141.971 kb on - strand, within SO_0134 at 142.015 kb on - strand, within SO_0134 at 142.036 kb on + strand, within SO_0134 at 142.103 kb on + strand, within SO_0134 at 142.109 kb on + strand, within SO_0134 at 142.125 kb on + strand, within SO_0134 at 142.169 kb on - strand, within SO_0134 at 142.312 kb on - strand at 142.312 kb on - strand at 142.438 kb on - strand, within SO0135 at 142.453 kb on + strand, within SO0135 at 142.491 kb on + strand, within SO0135 at 142.550 kb on - strand, within SO0135 at 142.556 kb on - strand, within SO0135 at 142.701 kb on + strand at 142.906 kb on + strand, within SO0136 at 143.146 kb on - strand, within SO0136 at 143.177 kb on - strand, within SO0136
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 140,398 + SO0131 0.57 -0.3 140,398 + SO0131 0.57 -0.6 140,398 + SO0131 0.57 +0.1 140,398 + SO0131 0.57 -0.6 140,398 + SO0131 0.57 -0.8 140,398 + SO0131 0.57 -1.2 140,398 + SO0131 0.57 +0.5 140,398 + SO0131 0.57 -0.4 140,398 + SO0131 0.57 -0.5 140,406 - SO0131 0.59 +0.1 140,406 - SO0131 0.59 -0.1 140,501 - SO0131 0.75 +0.8 140,501 - SO0131 0.75 +0.6 140,628 - +2.7 140,729 + -1.0 140,729 + -1.8 140,779 + +2.2 140,781 + -1.8 140,781 + -2.7 140,786 + SO0132 0.11 -1.1 140,786 + SO0132 0.11 -2.1 140,789 - SO0132 0.11 +0.1 140,789 - SO0132 0.11 -3.2 140,794 - SO0132 0.13 -1.2 140,963 + SO0132 0.54 -0.0 140,971 - SO0132 0.56 -2.8 141,005 - SO0132 0.64 -0.8 141,045 + SO0132 0.74 +0.2 141,074 + SO0132 0.81 +0.6 141,101 + SO0132 0.87 -1.8 141,101 + SO0132 0.87 -1.5 141,101 + SO0132 0.87 -2.7 141,141 - +2.2 141,141 - -1.6 141,225 + +0.7 141,285 - +0.8 141,319 + -1.5 141,374 - -0.1 141,441 - +0.4 141,585 + SO_0134 0.22 -1.9 141,661 + SO_0134 0.30 -0.8 141,716 - SO_0134 0.36 -1.0 141,716 - SO_0134 0.36 -0.0 141,781 + SO_0134 0.43 -0.9 141,888 + SO_0134 0.54 -2.3 141,895 - SO_0134 0.55 -1.4 141,934 + SO_0134 0.59 -1.1 141,956 - SO_0134 0.62 -1.0 141,956 - SO_0134 0.62 +1.7 141,971 - SO_0134 0.63 -0.1 142,015 - SO_0134 0.68 +1.8 142,036 + SO_0134 0.70 -0.6 142,103 + SO_0134 0.78 +0.9 142,109 + SO_0134 0.78 +0.7 142,125 + SO_0134 0.80 -1.1 142,169 - SO_0134 0.85 -0.2 142,312 - -2.2 142,312 - +1.2 142,438 - SO0135 0.30 +0.5 142,453 + SO0135 0.35 -0.3 142,491 + SO0135 0.48 +0.2 142,550 - SO0135 0.68 -0.1 142,556 - SO0135 0.70 -2.5 142,701 + -0.9 142,906 + SO0136 0.36 -0.1 143,146 - SO0136 0.72 -0.5 143,177 - SO0136 0.77 -0.2
Or see this region's nucleotide sequence