Strain Fitness in Shewanella oneidensis MR-1 around SO_2756

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,876,874	-		SO2753.2	0.85	+0.5
2,877,072	-				-0.6
2,877,754	-				+0.8
2,877,778	-				-0.2
2,877,778	-				-0.2
2,877,908	-				+1.7
2,878,044	+		SO_2756	0.30	-0.7
2,878,054	+		SO_2756	0.32	+1.5
2,878,085	+		SO_2756	0.37	-0.4
2,878,120	+		SO_2756	0.43	+0.6
2,878,184	-		SO_2756	0.53	+3.8
2,878,280	+		SO_2756	0.69	+0.3
2,878,411	+				+0.5
2,878,668	+				-0.2
2,878,685	+				-2.3
2,878,779	+				+0.2
2,878,779	+				+0.3
2,878,779	-				-0.6
2,878,787	-				-0.5
2,878,787	-				+0.6
2,878,787	-				+1.2
2,878,901	+				-0.8
2,878,901	-				-0.6
2,878,927	+				+1.1
2,878,984	+		SO2757	0.11	+1.1
2,878,992	-		SO2757	0.12	-0.6
2,879,059	+		SO2757	0.17	+0.9
2,879,059	+		SO2757	0.17	-0.1
2,879,061	-		SO2757	0.17	+0.7
2,879,063	+		SO2757	0.17	+2.0
2,879,063	+		SO2757	0.17	-0.1
2,879,067	-		SO2757	0.17	+2.8
2,879,096	+		SO2757	0.20	-0.7
2,879,132	-		SO2757	0.22	-1.9
2,879,177	-		SO2757	0.26	-0.1
2,879,279	+		SO2757	0.33	+0.4
2,879,279	+		SO2757	0.33	+2.1
2,879,291	+		SO2757	0.34	+0.1
2,879,291	+		SO2757	0.34	+0.9