Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004761 and ABIE53_004762 are separated by 25 nucleotides ABIE53_004762 and ABIE53_004763 are separated by 189 nucleotides
ABIE53_004761: ABIE53_004761 - 2-methylcitrate synthase, at 965,483 to 966,652
_004761
ABIE53_004762: ABIE53_004762 - citrate lyase subunit beta/citryl-CoA lyase, at 966,678 to 967,676
_004762
ABIE53_004763: ABIE53_004763 - malate dehydrogenase, at 967,866 to 968,849
_004763
Position (kb) 966
967
968 Strain fitness (log2 ratio) -1
0
1
2 at 965.995 kb on - strand, within ABIE53_004761 at 965.995 kb on - strand, within ABIE53_004761 at 965.995 kb on - strand, within ABIE53_004761 at 965.995 kb on - strand, within ABIE53_004761 at 965.995 kb on - strand, within ABIE53_004761 at 965.995 kb on - strand, within ABIE53_004761 at 965.995 kb on - strand, within ABIE53_004761 at 966.201 kb on + strand, within ABIE53_004761 at 966.202 kb on - strand, within ABIE53_004761 at 966.623 kb on + strand at 966.623 kb on + strand at 966.624 kb on - strand at 966.764 kb on - strand at 966.766 kb on + strand at 966.772 kb on + strand at 966.773 kb on - strand at 966.773 kb on - strand at 967.397 kb on - strand, within ABIE53_004762 at 967.741 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 965,995 - ABIE53_004761 0.44 -1.3 965,995 - ABIE53_004761 0.44 -1.0 965,995 - ABIE53_004761 0.44 +1.0 965,995 - ABIE53_004761 0.44 +1.4 965,995 - ABIE53_004761 0.44 +1.0 965,995 - ABIE53_004761 0.44 -1.7 965,995 - ABIE53_004761 0.44 +2.0 966,201 + ABIE53_004761 0.61 -0.6 966,202 - ABIE53_004761 0.61 +0.7 966,623 + -0.6 966,623 + -0.6 966,624 - +0.0 966,764 - +0.2 966,766 + +0.0 966,772 + -0.3 966,773 - -0.4 966,773 - -1.0 967,397 - ABIE53_004762 0.72 +2.6 967,741 + -0.6
Or see this region's nucleotide sequence