Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004522 and ABIE53_004523 overlap by 1 nucleotides ABIE53_004523 and ABIE53_004524 are separated by 106 nucleotides ABIE53_004524 and ABIE53_004525 overlap by 74 nucleotides ABIE53_004525 and ABIE53_004526 are separated by 105 nucleotides
ABIE53_004522: ABIE53_004522 - glycerol transport system permease protein, at 712,792 to 713,604
_004522
ABIE53_004523: ABIE53_004523 - putative small integral membrane protein, at 713,604 to 713,885
_004523
ABIE53_004524: ABIE53_004524 - ABC-type glycerol-3-phosphate transport system substrate-binding protein, at 713,992 to 715,335
_004524
ABIE53_004525: ABIE53_004525 - hypothetical protein, at 715,262 to 715,732
_004525
ABIE53_004526: ABIE53_004526 - uncharacterized protein (DUF1697 family), at 715,838 to 716,347
_004526
Position (kb) 713
714
715
716 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 712.995 kb on + strand, within ABIE53_004522 at 713.022 kb on + strand, within ABIE53_004522 at 713.168 kb on - strand, within ABIE53_004522 at 713.194 kb on + strand, within ABIE53_004522 at 713.195 kb on - strand, within ABIE53_004522 at 713.312 kb on - strand, within ABIE53_004522 at 713.314 kb on - strand, within ABIE53_004522 at 713.314 kb on - strand, within ABIE53_004522 at 713.314 kb on - strand, within ABIE53_004522 at 713.569 kb on + strand at 713.569 kb on + strand at 713.570 kb on - strand at 713.570 kb on - strand at 713.619 kb on + strand at 713.619 kb on + strand at 713.760 kb on - strand, within ABIE53_004523 at 713.781 kb on + strand, within ABIE53_004523 at 713.782 kb on - strand, within ABIE53_004523 at 713.807 kb on + strand, within ABIE53_004523 at 714.075 kb on - strand at 714.114 kb on + strand at 714.114 kb on + strand at 714.234 kb on + strand, within ABIE53_004524 at 714.238 kb on + strand, within ABIE53_004524 at 714.239 kb on - strand, within ABIE53_004524 at 714.365 kb on - strand, within ABIE53_004524 at 714.439 kb on + strand, within ABIE53_004524 at 714.440 kb on - strand, within ABIE53_004524 at 714.463 kb on + strand, within ABIE53_004524 at 714.464 kb on - strand, within ABIE53_004524 at 714.629 kb on - strand, within ABIE53_004524 at 714.667 kb on + strand, within ABIE53_004524 at 714.736 kb on - strand, within ABIE53_004524 at 714.935 kb on - strand, within ABIE53_004524 at 714.950 kb on - strand, within ABIE53_004524 at 715.059 kb on - strand, within ABIE53_004524 at 715.250 kb on + strand at 715.250 kb on + strand at 715.250 kb on + strand at 715.250 kb on + strand at 715.340 kb on + strand, within ABIE53_004525 at 715.365 kb on - strand, within ABIE53_004525 at 715.365 kb on - strand, within ABIE53_004525 at 715.365 kb on - strand, within ABIE53_004525 at 715.385 kb on + strand, within ABIE53_004525 at 715.439 kb on + strand, within ABIE53_004525 at 715.730 kb on + strand at 715.812 kb on + strand at 715.813 kb on - strand at 715.813 kb on - strand at 715.813 kb on - strand at 715.813 kb on - strand at 715.816 kb on - strand at 715.834 kb on + strand at 715.834 kb on + strand at 715.835 kb on - strand at 715.835 kb on - strand at 715.859 kb on + strand at 715.944 kb on + strand, within ABIE53_004526 at 715.945 kb on - strand, within ABIE53_004526 at 715.945 kb on - strand, within ABIE53_004526 at 715.945 kb on - strand, within ABIE53_004526 at 716.093 kb on + strand, within ABIE53_004526 at 716.094 kb on - strand, within ABIE53_004526 at 716.231 kb on - strand, within ABIE53_004526 at 716.231 kb on - strand, within ABIE53_004526 at 716.232 kb on + strand, within ABIE53_004526 at 716.233 kb on - strand, within ABIE53_004526
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 712,995 + ABIE53_004522 0.25 -2.3 713,022 + ABIE53_004522 0.28 +0.7 713,168 - ABIE53_004522 0.46 +0.3 713,194 + ABIE53_004522 0.49 -0.4 713,195 - ABIE53_004522 0.50 -1.1 713,312 - ABIE53_004522 0.64 -0.2 713,314 - ABIE53_004522 0.64 +0.1 713,314 - ABIE53_004522 0.64 +2.7 713,314 - ABIE53_004522 0.64 -0.2 713,569 + -0.2 713,569 + +2.5 713,570 - +1.9 713,570 - -0.9 713,619 + -1.1 713,619 + -0.9 713,760 - ABIE53_004523 0.55 +0.9 713,781 + ABIE53_004523 0.63 -1.7 713,782 - ABIE53_004523 0.63 -2.0 713,807 + ABIE53_004523 0.72 -0.4 714,075 - +2.4 714,114 + +1.9 714,114 + -2.0 714,234 + ABIE53_004524 0.18 +1.9 714,238 + ABIE53_004524 0.18 +0.3 714,239 - ABIE53_004524 0.18 -1.2 714,365 - ABIE53_004524 0.28 +0.9 714,439 + ABIE53_004524 0.33 -0.0 714,440 - ABIE53_004524 0.33 -1.8 714,463 + ABIE53_004524 0.35 -0.3 714,464 - ABIE53_004524 0.35 -0.1 714,629 - ABIE53_004524 0.47 -0.5 714,667 + ABIE53_004524 0.50 -0.8 714,736 - ABIE53_004524 0.55 -0.1 714,935 - ABIE53_004524 0.70 -1.3 714,950 - ABIE53_004524 0.71 +0.9 715,059 - ABIE53_004524 0.79 +0.7 715,250 + +0.5 715,250 + -1.1 715,250 + -0.5 715,250 + +0.9 715,340 + ABIE53_004525 0.17 -0.1 715,365 - ABIE53_004525 0.22 -0.5 715,365 - ABIE53_004525 0.22 +0.9 715,365 - ABIE53_004525 0.22 +0.2 715,385 + ABIE53_004525 0.26 +2.3 715,439 + ABIE53_004525 0.38 +1.4 715,730 + -1.9 715,812 + +1.9 715,813 - +0.3 715,813 - +2.2 715,813 - -0.4 715,813 - +0.9 715,816 - +0.3 715,834 + +1.5 715,834 + +0.1 715,835 - -0.4 715,835 - +0.3 715,859 + -1.1 715,944 + ABIE53_004526 0.21 -0.1 715,945 - ABIE53_004526 0.21 -0.5 715,945 - ABIE53_004526 0.21 -0.9 715,945 - ABIE53_004526 0.21 -1.1 716,093 + ABIE53_004526 0.50 +1.3 716,094 - ABIE53_004526 0.50 +0.9 716,231 - ABIE53_004526 0.77 +2.9 716,231 - ABIE53_004526 0.77 -0.6 716,232 + ABIE53_004526 0.77 -0.8 716,233 - ABIE53_004526 0.77 -1.3
Or see this region's nucleotide sequence