Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0082 and DVU0083 are separated by 129 nucleotides DVU0083 and DVU0084 are separated by 71 nucleotides DVU0084 and trpB-1 are separated by 516 nucleotides
DVU0082: DVU0082 - conserved hypothetical protein (TIGR), at 100,383 to 101,975
DVU0082
DVU0083: DVU0083 - conserved hypothetical protein (TIGR), at 102,105 to 102,524
DVU0083
DVU0084: DVU0084 - translation initiation factor, aIF-2BI family, putative (TIGR), at 102,596 to 103,648
DVU0084
DVU0085: trpB-1 - tryptophan synthase, beta subunit (TIGR), at 104,165 to 105,409
trpB-1
Position (kb) 102
103
104 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 101.671 kb on + strand, within DVU0082 at 101.682 kb on - strand, within DVU0082 at 101.730 kb on - strand, within DVU0082 at 101.731 kb on + strand, within DVU0082 at 101.731 kb on + strand, within DVU0082 at 101.731 kb on + strand, within DVU0082 at 101.733 kb on + strand, within DVU0082 at 101.739 kb on - strand, within DVU0082 at 101.739 kb on - strand, within DVU0082 at 101.751 kb on - strand, within DVU0082 at 101.782 kb on + strand, within DVU0082 at 101.841 kb on - strand at 101.853 kb on + strand at 101.861 kb on - strand at 101.875 kb on + strand at 101.900 kb on + strand at 101.908 kb on - strand at 101.952 kb on + strand at 101.957 kb on + strand at 101.979 kb on - strand at 102.027 kb on + strand at 102.044 kb on + strand at 102.140 kb on - strand at 102.140 kb on - strand at 102.157 kb on + strand, within DVU0083 at 102.162 kb on + strand, within DVU0083 at 102.165 kb on - strand, within DVU0083 at 102.189 kb on + strand, within DVU0083 at 102.202 kb on - strand, within DVU0083 at 102.237 kb on + strand, within DVU0083 at 102.247 kb on - strand, within DVU0083 at 102.334 kb on - strand, within DVU0083 at 102.355 kb on + strand, within DVU0083 at 102.355 kb on + strand, within DVU0083 at 102.355 kb on + strand, within DVU0083 at 102.393 kb on - strand, within DVU0083 at 102.433 kb on + strand, within DVU0083 at 102.486 kb on + strand at 102.569 kb on - strand at 102.700 kb on + strand at 102.735 kb on + strand, within DVU0084 at 102.758 kb on - strand, within DVU0084 at 102.806 kb on + strand, within DVU0084 at 102.948 kb on + strand, within DVU0084 at 102.959 kb on - strand, within DVU0084 at 102.961 kb on - strand, within DVU0084 at 103.040 kb on + strand, within DVU0084 at 103.068 kb on - strand, within DVU0084 at 103.097 kb on + strand, within DVU0084 at 103.117 kb on - strand, within DVU0084 at 103.130 kb on + strand, within DVU0084 at 103.135 kb on + strand, within DVU0084 at 103.152 kb on + strand, within DVU0084 at 103.152 kb on + strand, within DVU0084 at 103.160 kb on - strand, within DVU0084 at 103.160 kb on - strand, within DVU0084 at 103.189 kb on - strand, within DVU0084 at 103.210 kb on + strand, within DVU0084 at 103.210 kb on + strand, within DVU0084 at 103.213 kb on - strand, within DVU0084 at 103.306 kb on + strand, within DVU0084 at 103.319 kb on - strand, within DVU0084 at 103.319 kb on - strand, within DVU0084 at 103.333 kb on - strand, within DVU0084 at 103.333 kb on - strand, within DVU0084 at 103.353 kb on + strand, within DVU0084 at 103.361 kb on - strand, within DVU0084 at 103.363 kb on + strand, within DVU0084 at 103.366 kb on - strand, within DVU0084 at 103.371 kb on - strand, within DVU0084 at 103.377 kb on + strand, within DVU0084 at 103.417 kb on - strand, within DVU0084 at 103.489 kb on + strand, within DVU0084 at 103.515 kb on + strand, within DVU0084 at 103.560 kb on + strand at 103.611 kb on - strand at 103.711 kb on + strand at 103.711 kb on + strand at 103.716 kb on + strand at 103.719 kb on - strand at 103.728 kb on - strand at 103.739 kb on + strand at 103.739 kb on + strand at 103.851 kb on + strand at 103.851 kb on + strand at 103.859 kb on - strand at 103.862 kb on - strand at 103.896 kb on - strand at 103.971 kb on + strand at 103.979 kb on - strand at 103.983 kb on + strand at 103.983 kb on + strand at 103.983 kb on + strand at 103.983 kb on + strand at 103.991 kb on - strand at 103.991 kb on - strand at 103.991 kb on - strand at 103.991 kb on - strand at 103.991 kb on - strand at 104.083 kb on + strand at 104.140 kb on - strand at 104.170 kb on - strand at 104.244 kb on - strand at 104.244 kb on - strand at 104.251 kb on + strand at 104.251 kb on + strand at 104.251 kb on + strand at 104.251 kb on + strand at 104.259 kb on - strand at 104.259 kb on - strand at 104.259 kb on - strand at 104.259 kb on - strand at 104.283 kb on + strand at 104.293 kb on + strand, within trpB-1 at 104.299 kb on + strand, within trpB-1 at 104.313 kb on - strand, within trpB-1 at 104.364 kb on + strand, within trpB-1 at 104.384 kb on - strand, within trpB-1 at 104.384 kb on - strand, within trpB-1 at 104.395 kb on + strand, within trpB-1 at 104.395 kb on + strand, within trpB-1 at 104.395 kb on + strand, within trpB-1 at 104.395 kb on + strand, within trpB-1 at 104.403 kb on - strand, within trpB-1 at 104.403 kb on - strand, within trpB-1 at 104.403 kb on - strand, within trpB-1 at 104.403 kb on - strand, within trpB-1 at 104.403 kb on - strand, within trpB-1 at 104.448 kb on - strand, within trpB-1 at 104.458 kb on + strand, within trpB-1 at 104.464 kb on - strand, within trpB-1 at 104.521 kb on + strand, within trpB-1 at 104.531 kb on + strand, within trpB-1 at 104.536 kb on + strand, within trpB-1 at 104.536 kb on + strand, within trpB-1 at 104.566 kb on + strand, within trpB-1 at 104.569 kb on + strand, within trpB-1 at 104.569 kb on + strand, within trpB-1 at 104.588 kb on + strand, within trpB-1 at 104.599 kb on - strand, within trpB-1 at 104.600 kb on + strand, within trpB-1 at 104.600 kb on + strand, within trpB-1 at 104.637 kb on - strand, within trpB-1
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM remove 101,671 + DVU0082 0.81 -0.2 101,682 - DVU0082 0.82 -1.1 101,730 - DVU0082 0.85 +1.7 101,731 + DVU0082 0.85 -1.6 101,731 + DVU0082 0.85 +0.5 101,731 + DVU0082 0.85 +1.3 101,733 + DVU0082 0.85 +1.3 101,739 - DVU0082 0.85 -0.3 101,739 - DVU0082 0.85 +3.6 101,751 - DVU0082 0.86 -1.7 101,782 + DVU0082 0.88 +1.3 101,841 - -2.6 101,853 + -1.0 101,861 - +0.1 101,875 + -1.8 101,900 + +0.5 101,908 - +2.9 101,952 + -1.4 101,957 + -2.3 101,979 - -0.2 102,027 + -3.1 102,044 + -2.2 102,140 - -0.8 102,140 - +0.1 102,157 + DVU0083 0.12 +1.5 102,162 + DVU0083 0.14 +1.0 102,165 - DVU0083 0.14 -1.9 102,189 + DVU0083 0.20 +0.6 102,202 - DVU0083 0.23 -1.0 102,237 + DVU0083 0.31 -2.0 102,247 - DVU0083 0.34 -1.1 102,334 - DVU0083 0.55 -0.8 102,355 + DVU0083 0.60 +0.7 102,355 + DVU0083 0.60 -1.9 102,355 + DVU0083 0.60 +1.6 102,393 - DVU0083 0.69 +0.7 102,433 + DVU0083 0.78 -1.6 102,486 + -0.3 102,569 - -1.3 102,700 + +1.5 102,735 + DVU0084 0.13 +1.0 102,758 - DVU0084 0.15 -1.2 102,806 + DVU0084 0.20 +3.3 102,948 + DVU0084 0.33 +0.8 102,959 - DVU0084 0.34 +1.0 102,961 - DVU0084 0.35 +0.2 103,040 + DVU0084 0.42 +2.1 103,068 - DVU0084 0.45 +1.4 103,097 + DVU0084 0.48 +0.3 103,117 - DVU0084 0.49 -1.0 103,130 + DVU0084 0.51 +4.8 103,135 + DVU0084 0.51 +0.4 103,152 + DVU0084 0.53 -0.4 103,152 + DVU0084 0.53 +1.0 103,160 - DVU0084 0.54 +0.5 103,160 - DVU0084 0.54 -1.8 103,189 - DVU0084 0.56 -1.2 103,210 + DVU0084 0.58 -2.0 103,210 + DVU0084 0.58 -0.2 103,213 - DVU0084 0.59 +0.3 103,306 + DVU0084 0.67 +1.8 103,319 - DVU0084 0.69 +0.0 103,319 - DVU0084 0.69 +2.4 103,333 - DVU0084 0.70 +0.6 103,333 - DVU0084 0.70 +0.7 103,353 + DVU0084 0.72 +4.6 103,361 - DVU0084 0.73 +0.7 103,363 + DVU0084 0.73 +1.5 103,366 - DVU0084 0.73 +1.0 103,371 - DVU0084 0.74 +1.1 103,377 + DVU0084 0.74 +0.7 103,417 - DVU0084 0.78 +0.5 103,489 + DVU0084 0.85 +1.7 103,515 + DVU0084 0.87 -0.5 103,560 + -0.4 103,611 - -1.4 103,711 + -2.6 103,711 + +1.3 103,716 + -0.2 103,719 - -3.7 103,728 - +3.3 103,739 + -0.9 103,739 + +1.3 103,851 + +2.3 103,851 + -0.0 103,859 - -1.3 103,862 - -0.7 103,896 - -0.6 103,971 + -1.1 103,979 - -3.5 103,983 + -2.3 103,983 + -2.2 103,983 + -1.2 103,983 + -1.9 103,991 - +0.5 103,991 - -0.8 103,991 - -0.5 103,991 - -0.8 103,991 - -1.0 104,083 + -2.3 104,140 - +1.3 104,170 - -1.7 104,244 - -0.3 104,244 - +2.5 104,251 + +0.7 104,251 + -0.4 104,251 + -0.8 104,251 + +4.2 104,259 - +0.4 104,259 - -0.1 104,259 - -1.1 104,259 - +3.3 104,283 + -0.6 104,293 + trpB-1 DVU0085 0.10 -1.7 104,299 + trpB-1 DVU0085 0.11 +1.2 104,313 - trpB-1 DVU0085 0.12 +3.9 104,364 + trpB-1 DVU0085 0.16 -1.0 104,384 - trpB-1 DVU0085 0.18 -1.4 104,384 - trpB-1 DVU0085 0.18 -0.5 104,395 + trpB-1 DVU0085 0.18 -1.1 104,395 + trpB-1 DVU0085 0.18 -1.6 104,395 + trpB-1 DVU0085 0.18 +2.3 104,395 + trpB-1 DVU0085 0.18 +2.5 104,403 - trpB-1 DVU0085 0.19 -0.4 104,403 - trpB-1 DVU0085 0.19 -1.8 104,403 - trpB-1 DVU0085 0.19 -1.7 104,403 - trpB-1 DVU0085 0.19 +0.0 104,403 - trpB-1 DVU0085 0.19 -1.0 104,448 - trpB-1 DVU0085 0.23 -0.0 104,458 + trpB-1 DVU0085 0.24 +2.3 104,464 - trpB-1 DVU0085 0.24 -0.1 104,521 + trpB-1 DVU0085 0.29 +1.7 104,531 + trpB-1 DVU0085 0.29 -1.9 104,536 + trpB-1 DVU0085 0.30 +0.4 104,536 + trpB-1 DVU0085 0.30 +1.3 104,566 + trpB-1 DVU0085 0.32 +0.7 104,569 + trpB-1 DVU0085 0.32 -0.9 104,569 + trpB-1 DVU0085 0.32 -4.6 104,588 + trpB-1 DVU0085 0.34 -1.6 104,599 - trpB-1 DVU0085 0.35 -0.8 104,600 + trpB-1 DVU0085 0.35 +5.8 104,600 + trpB-1 DVU0085 0.35 +2.9 104,637 - trpB-1 DVU0085 0.38 -1.0
Or see this region's nucleotide sequence