Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0052

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0051 and era are separated by 92 nucleotidesera and DVU0053 are separated by 531 nucleotides DVU0051: DVU0051 - conserved hypothetical protein TIGR00044 (TIGR), at 56,041 to 56,754 DVU0051 DVU0052: era - GTP-binding protein Era (TIGR), at 56,847 to 57,773 era DVU0053: DVU0053 - sulfate permease, putative (TIGR), at 58,305 to 60,077 DVU0053 Position (kb) 56 57 58Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 55.851 kb on - strandat 55.851 kb on - strandat 55.851 kb on - strandat 55.883 kb on + strandat 55.901 kb on - strandat 55.910 kb on - strandat 55.925 kb on - strandat 55.935 kb on + strandat 55.967 kb on - strandat 55.980 kb on + strandat 55.980 kb on + strandat 56.004 kb on + strandat 56.008 kb on + strandat 56.025 kb on - strandat 56.026 kb on - strandat 56.070 kb on + strandat 56.090 kb on - strandat 56.115 kb on + strand, within DVU0051at 56.172 kb on + strand, within DVU0051at 56.172 kb on + strand, within DVU0051at 56.180 kb on - strand, within DVU0051at 56.180 kb on - strand, within DVU0051at 56.180 kb on - strand, within DVU0051at 56.266 kb on - strand, within DVU0051at 56.268 kb on + strand, within DVU0051at 56.276 kb on - strand, within DVU0051at 56.276 kb on - strand, within DVU0051at 56.276 kb on - strand, within DVU0051at 56.331 kb on - strand, within DVU0051at 56.362 kb on - strand, within DVU0051at 56.387 kb on - strand, within DVU0051at 56.456 kb on + strand, within DVU0051at 56.456 kb on + strand, within DVU0051at 56.456 kb on + strand, within DVU0051at 56.464 kb on - strand, within DVU0051at 56.464 kb on - strand, within DVU0051at 56.464 kb on - strand, within DVU0051at 56.464 kb on - strand, within DVU0051at 56.464 kb on - strand, within DVU0051at 56.464 kb on - strand, within DVU0051at 56.464 kb on - strand, within DVU0051at 56.464 kb on - strand, within DVU0051at 56.494 kb on - strand, within DVU0051at 56.508 kb on - strand, within DVU0051at 56.523 kb on + strand, within DVU0051at 56.576 kb on + strand, within DVU0051at 56.631 kb on + strand, within DVU0051at 56.665 kb on + strand, within DVU0051at 56.713 kb on + strandat 56.845 kb on + strandat 56.864 kb on + strandat 56.872 kb on - strandat 56.872 kb on - strandat 56.899 kb on - strandat 56.899 kb on - strandat 56.899 kb on - strandat 57.817 kb on - strandat 57.846 kb on - strandat 57.934 kb on - strandat 57.971 kb on + strandat 57.979 kb on - strandat 58.010 kb on + strandat 58.056 kb on - strandat 58.062 kb on + strandat 58.070 kb on - strandat 58.070 kb on - strandat 58.072 kb on + strandat 58.080 kb on - strandat 58.081 kb on + strandat 58.089 kb on - strandat 58.116 kb on - strandat 58.137 kb on + strandat 58.166 kb on + strandat 58.174 kb on - strandat 58.178 kb on + strandat 58.185 kb on + strandat 58.193 kb on - strandat 58.193 kb on - strandat 58.225 kb on + strandat 58.243 kb on - strandat 58.279 kb on - strandat 58.333 kb on + strandat 58.336 kb on - strandat 58.345 kb on + strandat 58.345 kb on + strandat 58.353 kb on - strandat 58.381 kb on - strandat 58.400 kb on + strandat 58.400 kb on + strandat 58.400 kb on + strandat 58.400 kb on + strandat 58.402 kb on + strandat 58.408 kb on - strandat 58.433 kb on + strandat 58.441 kb on - strandat 58.504 kb on - strand, within DVU0053at 58.512 kb on + strand, within DVU0053at 58.571 kb on + strand, within DVU0053at 58.571 kb on - strand, within DVU0053at 58.573 kb on - strand, within DVU0053at 58.588 kb on - strand, within DVU0053at 58.611 kb on + strand, within DVU0053at 58.611 kb on + strand, within DVU0053at 58.619 kb on - strand, within DVU0053at 58.619 kb on - strand, within DVU0053at 58.662 kb on + strand, within DVU0053at 58.683 kb on + strand, within DVU0053at 58.707 kb on + strand, within DVU0053at 58.729 kb on + strand, within DVU0053at 58.739 kb on + strand, within DVU0053at 58.747 kb on - strand, within DVU0053

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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55,851 - -1.1
55,851 - -0.8
55,851 - +1.7
55,883 + +0.7
55,901 - +0.3
55,910 - +2.0
55,925 - +1.7
55,935 + -1.9
55,967 - -0.8
55,980 + -2.0
55,980 + -0.3
56,004 + -0.0
56,008 + -1.7
56,025 - -0.9
56,026 - +0.2
56,070 + -2.0
56,090 - -1.7
56,115 + DVU0051 0.10 -1.5
56,172 + DVU0051 0.18 -0.7
56,172 + DVU0051 0.18 -2.5
56,180 - DVU0051 0.19 +4.6
56,180 - DVU0051 0.19 +2.3
56,180 - DVU0051 0.19 +1.7
56,266 - DVU0051 0.32 -1.2
56,268 + DVU0051 0.32 -2.2
56,276 - DVU0051 0.33 -1.1
56,276 - DVU0051 0.33 -1.5
56,276 - DVU0051 0.33 +2.3
56,331 - DVU0051 0.41 -1.6
56,362 - DVU0051 0.45 -1.6
56,387 - DVU0051 0.48 -0.6
56,456 + DVU0051 0.58 -0.3
56,456 + DVU0051 0.58 -1.3
56,456 + DVU0051 0.58 -1.4
56,464 - DVU0051 0.59 +2.3
56,464 - DVU0051 0.59 -1.5
56,464 - DVU0051 0.59 +0.1
56,464 - DVU0051 0.59 +1.1
56,464 - DVU0051 0.59 -2.6
56,464 - DVU0051 0.59 -1.1
56,464 - DVU0051 0.59 -0.4
56,464 - DVU0051 0.59 -1.7
56,494 - DVU0051 0.63 -0.5
56,508 - DVU0051 0.65 +2.3
56,523 + DVU0051 0.68 -1.4
56,576 + DVU0051 0.75 +0.5
56,631 + DVU0051 0.83 +2.3
56,665 + DVU0051 0.87 -2.0
56,713 + +0.7
56,845 + -0.9
56,864 + +1.9
56,872 - +1.3
56,872 - -0.3
56,899 - +1.7
56,899 - -0.2
56,899 - +0.7
57,817 - +0.8
57,846 - +0.1
57,934 - +1.7
57,971 + +0.3
57,979 - +2.3
58,010 + -2.1
58,056 - -0.5
58,062 + -0.2
58,070 - -0.4
58,070 - -1.5
58,072 + +0.4
58,080 - -0.8
58,081 + -1.3
58,089 - +2.3
58,116 - -1.8
58,137 + -1.6
58,166 + -0.6
58,174 - -1.2
58,178 + -0.4
58,185 + +1.8
58,193 - -1.0
58,193 - -1.6
58,225 + -1.3
58,243 - +0.1
58,279 - +1.5
58,333 + +0.5
58,336 - -2.8
58,345 + +0.9
58,345 + -0.1
58,353 - +0.1
58,381 - -0.5
58,400 + +0.1
58,400 + -1.7
58,400 + +0.7
58,400 + +0.4
58,402 + +1.3
58,408 - -1.5
58,433 + -0.1
58,441 - -2.3
58,504 - DVU0053 0.11 -0.8
58,512 + DVU0053 0.12 +0.5
58,571 + DVU0053 0.15 -1.8
58,571 - DVU0053 0.15 -0.5
58,573 - DVU0053 0.15 -0.9
58,588 - DVU0053 0.16 +0.9
58,611 + DVU0053 0.17 -0.7
58,611 + DVU0053 0.17 +0.1
58,619 - DVU0053 0.18 +1.4
58,619 - DVU0053 0.18 -0.5
58,662 + DVU0053 0.20 +0.7
58,683 + DVU0053 0.21 -1.2
58,707 + DVU0053 0.23 -1.2
58,729 + DVU0053 0.24 -2.4
58,739 + DVU0053 0.24 -0.8
58,747 - DVU0053 0.25 -1.9

Or see this region's nucleotide sequence