Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3151

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrpsA and DVU3151 are separated by 214 nucleotidesDVU3151 and DVU3152 are separated by 78 nucleotides DVU3150: rpsA - ribosomal protein S1 (TIGR), at 3,301,599 to 3,303,332 rpsA DVU3151: DVU3151 - MiaB-like tRNA modifying enzyme YliG, TIGR01125 (TIGR), at 3,303,547 to 3,304,839 DVU3151 DVU3152: DVU3152 - sensory box histidine kinase (TIGR), at 3,304,918 to 3,306,579 DVU3152 Position (kb) 3303 3304 3305Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 3303.424 kb on + strandat 3303.476 kb on + strandat 3303.476 kb on + strandat 3303.534 kb on + strandat 3303.545 kb on + strandat 3303.564 kb on + strandat 3303.593 kb on + strandat 3303.610 kb on + strandat 3303.612 kb on + strandat 3303.676 kb on - strandat 3303.687 kb on + strand, within DVU3151at 3303.695 kb on - strand, within DVU3151at 3303.757 kb on + strand, within DVU3151at 3303.759 kb on - strand, within DVU3151at 3303.785 kb on - strand, within DVU3151at 3303.807 kb on + strand, within DVU3151at 3303.807 kb on + strand, within DVU3151at 3303.807 kb on + strand, within DVU3151at 3303.815 kb on - strand, within DVU3151at 3303.848 kb on + strand, within DVU3151at 3303.858 kb on + strand, within DVU3151at 3303.889 kb on + strand, within DVU3151at 3303.897 kb on - strand, within DVU3151at 3303.911 kb on + strand, within DVU3151at 3303.916 kb on + strand, within DVU3151at 3303.919 kb on - strand, within DVU3151at 3303.926 kb on + strand, within DVU3151at 3303.931 kb on + strand, within DVU3151at 3303.934 kb on - strand, within DVU3151at 3303.934 kb on - strand, within DVU3151at 3303.955 kb on - strand, within DVU3151at 3303.960 kb on + strand, within DVU3151at 3304.160 kb on + strand, within DVU3151at 3304.185 kb on + strand, within DVU3151at 3304.185 kb on + strand, within DVU3151at 3304.193 kb on - strand, within DVU3151at 3304.193 kb on - strand, within DVU3151at 3304.211 kb on + strand, within DVU3151at 3304.232 kb on - strand, within DVU3151at 3304.355 kb on - strand, within DVU3151at 3304.382 kb on + strand, within DVU3151at 3304.390 kb on - strand, within DVU3151at 3304.447 kb on + strand, within DVU3151at 3304.447 kb on + strand, within DVU3151at 3304.455 kb on - strand, within DVU3151at 3304.455 kb on - strand, within DVU3151at 3304.455 kb on - strand, within DVU3151at 3304.472 kb on + strand, within DVU3151at 3304.472 kb on + strand, within DVU3151at 3304.488 kb on + strand, within DVU3151at 3304.536 kb on + strand, within DVU3151at 3304.536 kb on + strand, within DVU3151at 3304.555 kb on - strand, within DVU3151at 3304.557 kb on + strand, within DVU3151at 3304.671 kb on - strand, within DVU3151at 3304.683 kb on - strand, within DVU3151at 3304.700 kb on - strand, within DVU3151at 3304.700 kb on - strand, within DVU3151at 3304.700 kb on - strand, within DVU3151at 3304.705 kb on + strand, within DVU3151at 3304.706 kb on + strand, within DVU3151at 3304.714 kb on - strandat 3304.727 kb on + strandat 3304.746 kb on - strandat 3304.771 kb on + strandat 3304.787 kb on + strandat 3304.806 kb on - strandat 3304.817 kb on - strandat 3304.818 kb on - strandat 3304.897 kb on - strandat 3304.897 kb on - strandat 3304.898 kb on - strandat 3304.994 kb on + strandat 3305.045 kb on + strandat 3305.132 kb on + strand, within DVU3152at 3305.153 kb on + strand, within DVU3152at 3305.171 kb on + strand, within DVU3152at 3305.237 kb on + strand, within DVU3152at 3305.282 kb on - strand, within DVU3152at 3305.392 kb on + strand, within DVU3152at 3305.394 kb on + strand, within DVU3152at 3305.437 kb on - strand, within DVU3152at 3305.461 kb on - strand, within DVU3152at 3305.461 kb on - strand, within DVU3152at 3305.547 kb on + strand, within DVU3152at 3305.547 kb on + strand, within DVU3152at 3305.555 kb on - strand, within DVU3152at 3305.555 kb on - strand, within DVU3152at 3305.555 kb on - strand, within DVU3152at 3305.621 kb on - strand, within DVU3152at 3305.636 kb on - strand, within DVU3152at 3305.822 kb on + strand, within DVU3152at 3305.834 kb on - strand, within DVU3152at 3305.834 kb on - strand, within DVU3152at 3305.834 kb on - strand, within DVU3152at 3305.834 kb on - strand, within DVU3152

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
remove
3,303,424 + -0.1
3,303,476 + +1.1
3,303,476 + -0.3
3,303,534 + -1.1
3,303,545 + -1.8
3,303,564 + -1.0
3,303,593 + -0.4
3,303,610 + -1.4
3,303,612 + -0.3
3,303,676 - -1.6
3,303,687 + DVU3151 0.11 -0.9
3,303,695 - DVU3151 0.11 -1.0
3,303,757 + DVU3151 0.16 +0.4
3,303,759 - DVU3151 0.16 +1.1
3,303,785 - DVU3151 0.18 +0.8
3,303,807 + DVU3151 0.20 +0.9
3,303,807 + DVU3151 0.20 +6.8
3,303,807 + DVU3151 0.20 +1.4
3,303,815 - DVU3151 0.21 +1.6
3,303,848 + DVU3151 0.23 +1.0
3,303,858 + DVU3151 0.24 -1.5
3,303,889 + DVU3151 0.26 -0.8
3,303,897 - DVU3151 0.27 +1.3
3,303,911 + DVU3151 0.28 -1.1
3,303,916 + DVU3151 0.29 +0.2
3,303,919 - DVU3151 0.29 +0.7
3,303,926 + DVU3151 0.29 -1.2
3,303,931 + DVU3151 0.30 +0.6
3,303,934 - DVU3151 0.30 +2.6
3,303,934 - DVU3151 0.30 +4.4
3,303,955 - DVU3151 0.32 +1.6
3,303,960 + DVU3151 0.32 -0.1
3,304,160 + DVU3151 0.47 +1.3
3,304,185 + DVU3151 0.49 -0.3
3,304,185 + DVU3151 0.49 -0.5
3,304,193 - DVU3151 0.50 +0.2
3,304,193 - DVU3151 0.50 +0.8
3,304,211 + DVU3151 0.51 +0.6
3,304,232 - DVU3151 0.53 +1.4
3,304,355 - DVU3151 0.62 +1.3
3,304,382 + DVU3151 0.65 -2.3
3,304,390 - DVU3151 0.65 +0.6
3,304,447 + DVU3151 0.70 +1.3
3,304,447 + DVU3151 0.70 -1.1
3,304,455 - DVU3151 0.70 +1.3
3,304,455 - DVU3151 0.70 -0.2
3,304,455 - DVU3151 0.70 +3.1
3,304,472 + DVU3151 0.72 +0.7
3,304,472 + DVU3151 0.72 -2.0
3,304,488 + DVU3151 0.73 +1.1
3,304,536 + DVU3151 0.76 +2.2
3,304,536 + DVU3151 0.76 +1.6
3,304,555 - DVU3151 0.78 +0.3
3,304,557 + DVU3151 0.78 +0.1
3,304,671 - DVU3151 0.87 -0.6
3,304,683 - DVU3151 0.88 -0.1
3,304,700 - DVU3151 0.89 +0.8
3,304,700 - DVU3151 0.89 +0.7
3,304,700 - DVU3151 0.89 -0.2
3,304,705 + DVU3151 0.90 -1.9
3,304,706 + DVU3151 0.90 -0.9
3,304,714 - +3.2
3,304,727 + +1.2
3,304,746 - +0.3
3,304,771 + -1.3
3,304,787 + +1.6
3,304,806 - +0.4
3,304,817 - -0.9
3,304,818 - +1.4
3,304,897 - -0.7
3,304,897 - -0.4
3,304,898 - +0.1
3,304,994 + -4.0
3,305,045 + -1.3
3,305,132 + DVU3152 0.13 +0.3
3,305,153 + DVU3152 0.14 +0.5
3,305,171 + DVU3152 0.15 -0.9
3,305,237 + DVU3152 0.19 +0.7
3,305,282 - DVU3152 0.22 +2.4
3,305,392 + DVU3152 0.29 -0.1
3,305,394 + DVU3152 0.29 -0.8
3,305,437 - DVU3152 0.31 -0.4
3,305,461 - DVU3152 0.33 -0.2
3,305,461 - DVU3152 0.33 +1.4
3,305,547 + DVU3152 0.38 +0.4
3,305,547 + DVU3152 0.38 -0.4
3,305,555 - DVU3152 0.38 +1.6
3,305,555 - DVU3152 0.38 -1.1
3,305,555 - DVU3152 0.38 -1.1
3,305,621 - DVU3152 0.42 +2.7
3,305,636 - DVU3152 0.43 +2.4
3,305,822 + DVU3152 0.54 -0.2
3,305,834 - DVU3152 0.55 -2.1
3,305,834 - DVU3152 0.55 -1.6
3,305,834 - DVU3152 0.55 +1.6
3,305,834 - DVU3152 0.55 +0.3

Or see this region's nucleotide sequence