Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2948

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2947 and DVU2948 are separated by 669 nucleotidesDVU2948 and DVU2949 are separated by 203 nucleotidesDVU2949 and DVU2950 overlap by 14 nucleotides DVU2947: DVU2947 - anaerobic ribonucleoside-triphosphate reductase, putative (TIGR), at 3,050,747 to 3,052,816 DVU2947 DVU2948: DVU2948 - bacterial flagellin N-terminal domain protein (TIGR), at 3,053,486 to 3,054,334 DVU2948 DVU2949: DVU2949 - membrane protein, putative (TIGR), at 3,054,538 to 3,054,891 DVU2949 DVU2950: DVU2950 - sensory box protein/GGDEF domain protein, authentic frameshift (TIGR), at 3,054,878 to 3,056,595 DVU2950 Position (kb) 3053 3054 3055Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3052.636 kb on - strandat 3052.645 kb on + strandat 3052.645 kb on + strandat 3052.655 kb on + strandat 3052.833 kb on + strandat 3052.877 kb on - strandat 3052.885 kb on - strandat 3052.972 kb on + strandat 3052.990 kb on - strandat 3052.990 kb on - strandat 3053.165 kb on + strandat 3053.419 kb on + strandat 3053.419 kb on + strandat 3053.419 kb on + strandat 3053.419 kb on + strandat 3053.434 kb on - strandat 3053.564 kb on - strandat 3053.564 kb on - strandat 3053.586 kb on + strand, within DVU2948at 3053.606 kb on + strand, within DVU2948at 3053.622 kb on + strand, within DVU2948at 3053.735 kb on - strand, within DVU2948at 3053.801 kb on - strand, within DVU2948at 3053.851 kb on - strand, within DVU2948at 3053.876 kb on + strand, within DVU2948at 3053.909 kb on + strand, within DVU2948at 3053.917 kb on - strand, within DVU2948at 3053.936 kb on - strand, within DVU2948at 3053.995 kb on + strand, within DVU2948at 3054.023 kb on + strand, within DVU2948at 3054.079 kb on + strand, within DVU2948at 3054.079 kb on + strand, within DVU2948at 3054.087 kb on - strand, within DVU2948at 3054.087 kb on - strand, within DVU2948at 3054.115 kb on + strand, within DVU2948at 3054.154 kb on + strand, within DVU2948at 3054.162 kb on - strand, within DVU2948at 3054.267 kb on + strandat 3054.269 kb on + strandat 3054.269 kb on + strandat 3054.288 kb on + strandat 3054.288 kb on + strandat 3054.374 kb on + strandat 3054.379 kb on + strandat 3054.387 kb on - strandat 3054.394 kb on + strandat 3054.397 kb on - strandat 3054.402 kb on - strandat 3054.402 kb on - strandat 3054.402 kb on - strandat 3054.478 kb on - strandat 3054.530 kb on - strandat 3054.540 kb on + strandat 3054.557 kb on + strandat 3054.569 kb on + strandat 3054.597 kb on + strand, within DVU2949at 3054.597 kb on + strand, within DVU2949at 3054.597 kb on + strand, within DVU2949at 3054.638 kb on - strand, within DVU2949at 3054.638 kb on - strand, within DVU2949at 3054.667 kb on + strand, within DVU2949at 3054.703 kb on - strand, within DVU2949at 3054.703 kb on - strand, within DVU2949at 3054.706 kb on + strand, within DVU2949at 3054.716 kb on + strand, within DVU2949at 3054.720 kb on + strand, within DVU2949at 3054.721 kb on + strand, within DVU2949at 3054.740 kb on - strand, within DVU2949at 3054.755 kb on + strand, within DVU2949at 3054.766 kb on + strand, within DVU2949at 3054.860 kb on - strandat 3054.900 kb on + strandat 3054.968 kb on + strandat 3054.976 kb on - strandat 3055.033 kb on + strandat 3055.033 kb on + strandat 3055.059 kb on + strand, within DVU2950at 3055.067 kb on - strand, within DVU2950at 3055.152 kb on + strand, within DVU2950at 3055.162 kb on - strand, within DVU2950at 3055.174 kb on + strand, within DVU2950at 3055.253 kb on + strand, within DVU2950at 3055.261 kb on - strand, within DVU2950at 3055.278 kb on + strand, within DVU2950at 3055.286 kb on - strand, within DVU2950at 3055.323 kb on - strand, within DVU2950at 3055.327 kb on + strand, within DVU2950

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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3,052,636 - +1.9
3,052,645 + -0.2
3,052,645 + -0.6
3,052,655 + -0.6
3,052,833 + +2.3
3,052,877 - +0.2
3,052,885 - -0.3
3,052,972 + -0.6
3,052,990 - -0.7
3,052,990 - +0.6
3,053,165 + +1.1
3,053,419 + -0.9
3,053,419 + -0.4
3,053,419 + -0.5
3,053,419 + +0.1
3,053,434 - -0.3
3,053,564 - +0.3
3,053,564 - -1.6
3,053,586 + DVU2948 0.12 -1.4
3,053,606 + DVU2948 0.14 -0.9
3,053,622 + DVU2948 0.16 +0.3
3,053,735 - DVU2948 0.29 +1.1
3,053,801 - DVU2948 0.37 +1.1
3,053,851 - DVU2948 0.43 -0.8
3,053,876 + DVU2948 0.46 -1.9
3,053,909 + DVU2948 0.50 -1.9
3,053,917 - DVU2948 0.51 +2.4
3,053,936 - DVU2948 0.53 +2.4
3,053,995 + DVU2948 0.60 -1.9
3,054,023 + DVU2948 0.63 -2.1
3,054,079 + DVU2948 0.70 +0.3
3,054,079 + DVU2948 0.70 +0.1
3,054,087 - DVU2948 0.71 -1.8
3,054,087 - DVU2948 0.71 -1.3
3,054,115 + DVU2948 0.74 -0.1
3,054,154 + DVU2948 0.79 -1.0
3,054,162 - DVU2948 0.80 -1.3
3,054,267 + -1.5
3,054,269 + +0.3
3,054,269 + +1.9
3,054,288 + +0.3
3,054,288 + -1.6
3,054,374 + +0.1
3,054,379 + -0.6
3,054,387 - -1.3
3,054,394 + -0.6
3,054,397 - +1.4
3,054,402 - +0.9
3,054,402 - -1.7
3,054,402 - -1.1
3,054,478 - +1.3
3,054,530 - -4.1
3,054,540 + +0.3
3,054,557 + -0.6
3,054,569 + +1.4
3,054,597 + DVU2949 0.17 +0.6
3,054,597 + DVU2949 0.17 -0.5
3,054,597 + DVU2949 0.17 -0.9
3,054,638 - DVU2949 0.28 +0.3
3,054,638 - DVU2949 0.28 -0.1
3,054,667 + DVU2949 0.36 +1.1
3,054,703 - DVU2949 0.47 -0.7
3,054,703 - DVU2949 0.47 +0.4
3,054,706 + DVU2949 0.47 -1.0
3,054,716 + DVU2949 0.50 +0.1
3,054,720 + DVU2949 0.51 -0.5
3,054,721 + DVU2949 0.52 -1.6
3,054,740 - DVU2949 0.57 +0.0
3,054,755 + DVU2949 0.61 -2.5
3,054,766 + DVU2949 0.64 -0.6
3,054,860 - -1.2
3,054,900 + +0.6
3,054,968 + +0.5
3,054,976 - -0.1
3,055,033 + -0.9
3,055,033 + -1.4
3,055,059 + DVU2950 0.11 +1.3
3,055,067 - DVU2950 0.11 -0.6
3,055,152 + DVU2950 0.16 -0.8
3,055,162 - DVU2950 0.17 +0.4
3,055,174 + DVU2950 0.17 -2.2
3,055,253 + DVU2950 0.22 -0.8
3,055,261 - DVU2950 0.22 -0.1
3,055,278 + DVU2950 0.23 -2.8
3,055,286 - DVU2950 0.24 +2.5
3,055,323 - DVU2950 0.26 +0.9
3,055,327 + DVU2950 0.26 -0.1

Or see this region's nucleotide sequence