Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2841

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2839 and DVU2840 are separated by 108 nucleotidesDVU2840 and DVU2841 overlap by 1 nucleotidesDVU2841 and dcm are separated by 139 nucleotides DVU2839: DVU2839 - conserved hypothetical protein (TIGR), at 2,943,651 to 2,944,175 DVU2839 DVU2840: DVU2840 - conserved hypothetical protein (TIGR), at 2,944,284 to 2,944,985 DVU2840 DVU2841: DVU2841 - type II restriction endonuclease, putative (TIGR), at 2,944,985 to 2,946,184 DVU2841 DVU2842: dcm - type II DNA modification methyltransferase, putative (TIGR), at 2,946,324 to 2,947,400 dcm Position (kb) 2944 2945 2946 2947Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2943.988 kb on + strand, within DVU2839at 2944.091 kb on + strand, within DVU2839at 2944.112 kb on + strand, within DVU2839at 2944.803 kb on + strand, within DVU2840at 2945.136 kb on - strand, within DVU2841at 2945.330 kb on - strand, within DVU2841at 2945.349 kb on + strand, within DVU2841at 2945.368 kb on + strand, within DVU2841at 2945.437 kb on + strand, within DVU2841at 2945.437 kb on - strand, within DVU2841at 2945.447 kb on + strand, within DVU2841at 2945.467 kb on - strand, within DVU2841at 2945.490 kb on - strand, within DVU2841at 2945.505 kb on + strand, within DVU2841at 2945.521 kb on + strand, within DVU2841at 2945.537 kb on + strand, within DVU2841at 2945.663 kb on + strand, within DVU2841at 2945.843 kb on - strand, within DVU2841at 2945.914 kb on - strand, within DVU2841at 2945.930 kb on + strand, within DVU2841at 2945.960 kb on + strand, within DVU2841at 2945.970 kb on + strand, within DVU2841at 2946.128 kb on - strandat 2946.146 kb on + strandat 2946.172 kb on - strandat 2946.285 kb on - strandat 2946.293 kb on - strandat 2946.316 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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2,943,988 + DVU2839 0.64 -2.1
2,944,091 + DVU2839 0.84 -3.1
2,944,112 + DVU2839 0.88 -1.7
2,944,803 + DVU2840 0.74 -0.7
2,945,136 - DVU2841 0.13 +0.5
2,945,330 - DVU2841 0.29 -0.7
2,945,349 + DVU2841 0.30 -0.7
2,945,368 + DVU2841 0.32 +0.1
2,945,437 + DVU2841 0.38 +4.2
2,945,437 - DVU2841 0.38 +1.8
2,945,447 + DVU2841 0.39 -0.6
2,945,467 - DVU2841 0.40 -1.8
2,945,490 - DVU2841 0.42 -0.3
2,945,505 + DVU2841 0.43 +2.1
2,945,521 + DVU2841 0.45 -1.5
2,945,537 + DVU2841 0.46 +0.8
2,945,663 + DVU2841 0.56 -1.3
2,945,843 - DVU2841 0.71 -1.8
2,945,914 - DVU2841 0.77 -0.3
2,945,930 + DVU2841 0.79 -0.4
2,945,960 + DVU2841 0.81 +0.8
2,945,970 + DVU2841 0.82 -1.9
2,946,128 - -0.8
2,946,146 + -0.8
2,946,172 - -1.2
2,946,285 - -0.7
2,946,293 - +0.9
2,946,316 - -1.8

Or see this region's nucleotide sequence