Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2020

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2019 and DVU2020 are separated by 14 nucleotidesDVU2020 and DVU2021 overlap by 4 nucleotidesDVU2021 and DVU2022 overlap by 1 nucleotides DVU2019: DVU2019 - conserved hypothetical protein (TIGR), at 2,096,176 to 2,098,245 DVU2019 DVU2020: DVU2020 - conserved hypothetical protein (TIGR), at 2,098,260 to 2,100,758 DVU2020 DVU2021: DVU2021 - hypothetical protein (TIGR), at 2,100,755 to 2,101,222 DVU2021 DVU2022: DVU2022 - conserved hypothetical protein (TIGR), at 2,101,222 to 2,104,698 DVU2022 Position (kb) 2098 2099 2100 2101Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2097.283 kb on + strand, within DVU2019at 2097.286 kb on - strand, within DVU2019at 2097.388 kb on + strand, within DVU2019at 2097.429 kb on + strand, within DVU2019at 2097.578 kb on - strand, within DVU2019at 2097.844 kb on - strand, within DVU2019at 2097.960 kb on + strand, within DVU2019at 2097.960 kb on + strand, within DVU2019at 2097.968 kb on - strand, within DVU2019at 2097.968 kb on - strand, within DVU2019at 2097.968 kb on - strand, within DVU2019at 2098.026 kb on - strand, within DVU2019at 2098.026 kb on - strand, within DVU2019at 2098.043 kb on + strandat 2098.117 kb on + strandat 2098.120 kb on - strandat 2098.130 kb on - strandat 2098.341 kb on - strandat 2098.413 kb on + strandat 2098.451 kb on + strandat 2098.498 kb on + strandat 2098.498 kb on + strandat 2098.560 kb on - strand, within DVU2020at 2098.577 kb on + strand, within DVU2020at 2098.595 kb on + strand, within DVU2020at 2098.657 kb on + strand, within DVU2020at 2098.706 kb on - strand, within DVU2020at 2098.756 kb on + strand, within DVU2020at 2098.767 kb on + strand, within DVU2020at 2098.798 kb on - strand, within DVU2020at 2098.811 kb on + strand, within DVU2020at 2098.940 kb on + strand, within DVU2020at 2099.027 kb on + strand, within DVU2020at 2099.223 kb on - strand, within DVU2020at 2099.230 kb on - strand, within DVU2020at 2099.300 kb on + strand, within DVU2020at 2099.323 kb on - strand, within DVU2020at 2099.361 kb on + strand, within DVU2020at 2099.427 kb on + strand, within DVU2020at 2099.465 kb on + strand, within DVU2020at 2099.670 kb on - strand, within DVU2020at 2099.722 kb on - strand, within DVU2020at 2099.758 kb on - strand, within DVU2020at 2099.782 kb on + strand, within DVU2020at 2099.792 kb on - strand, within DVU2020at 2099.918 kb on + strand, within DVU2020at 2099.931 kb on - strand, within DVU2020at 2100.010 kb on + strand, within DVU2020at 2100.036 kb on + strand, within DVU2020at 2100.068 kb on - strand, within DVU2020at 2100.115 kb on + strand, within DVU2020at 2100.414 kb on + strand, within DVU2020at 2100.528 kb on - strandat 2100.558 kb on - strandat 2100.899 kb on - strand, within DVU2021at 2101.154 kb on - strand, within DVU2021at 2101.330 kb on - strandat 2101.342 kb on - strandat 2101.419 kb on - strandat 2101.484 kb on + strandat 2101.505 kb on + strandat 2101.547 kb on + strandat 2101.547 kb on + strandat 2101.555 kb on - strandat 2101.555 kb on - strandat 2101.572 kb on + strand, within DVU2022at 2101.639 kb on - strand, within DVU2022at 2101.662 kb on + strand, within DVU2022at 2101.679 kb on + strand, within DVU2022at 2101.687 kb on - strand, within DVU2022at 2101.687 kb on - strand, within DVU2022

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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2,097,283 + DVU2019 0.53 -1.7
2,097,286 - DVU2019 0.54 -0.9
2,097,388 + DVU2019 0.59 -2.5
2,097,429 + DVU2019 0.61 -0.2
2,097,578 - DVU2019 0.68 -0.7
2,097,844 - DVU2019 0.81 -0.2
2,097,960 + DVU2019 0.86 +0.7
2,097,960 + DVU2019 0.86 +1.5
2,097,968 - DVU2019 0.87 -1.7
2,097,968 - DVU2019 0.87 -1.4
2,097,968 - DVU2019 0.87 -1.7
2,098,026 - DVU2019 0.89 -0.5
2,098,026 - DVU2019 0.89 +1.0
2,098,043 + +0.5
2,098,117 + -0.6
2,098,120 - -1.8
2,098,130 - -0.5
2,098,341 - +0.3
2,098,413 + +1.5
2,098,451 + -0.2
2,098,498 + -0.3
2,098,498 + +0.8
2,098,560 - DVU2020 0.12 +3.5
2,098,577 + DVU2020 0.13 +0.4
2,098,595 + DVU2020 0.13 -0.1
2,098,657 + DVU2020 0.16 -1.1
2,098,706 - DVU2020 0.18 +0.8
2,098,756 + DVU2020 0.20 +0.2
2,098,767 + DVU2020 0.20 +0.8
2,098,798 - DVU2020 0.22 +0.1
2,098,811 + DVU2020 0.22 +1.2
2,098,940 + DVU2020 0.27 -0.6
2,099,027 + DVU2020 0.31 +1.3
2,099,223 - DVU2020 0.39 +0.2
2,099,230 - DVU2020 0.39 +0.6
2,099,300 + DVU2020 0.42 +0.7
2,099,323 - DVU2020 0.43 +0.5
2,099,361 + DVU2020 0.44 +0.1
2,099,427 + DVU2020 0.47 -0.8
2,099,465 + DVU2020 0.48 +0.1
2,099,670 - DVU2020 0.56 +1.5
2,099,722 - DVU2020 0.59 +0.0
2,099,758 - DVU2020 0.60 +0.1
2,099,782 + DVU2020 0.61 -0.4
2,099,792 - DVU2020 0.61 +2.5
2,099,918 + DVU2020 0.66 -1.0
2,099,931 - DVU2020 0.67 +2.2
2,100,010 + DVU2020 0.70 +1.1
2,100,036 + DVU2020 0.71 +0.2
2,100,068 - DVU2020 0.72 -1.0
2,100,115 + DVU2020 0.74 +0.6
2,100,414 + DVU2020 0.86 +0.1
2,100,528 - +0.4
2,100,558 - +1.5
2,100,899 - DVU2021 0.31 -0.6
2,101,154 - DVU2021 0.85 +0.4
2,101,330 - -0.1
2,101,342 - +1.1
2,101,419 - +0.5
2,101,484 + +0.1
2,101,505 + +1.3
2,101,547 + -0.1
2,101,547 + +0.6
2,101,555 - -0.0
2,101,555 - +0.7
2,101,572 + DVU2022 0.10 +0.5
2,101,639 - DVU2022 0.12 +0.6
2,101,662 + DVU2022 0.13 +0.6
2,101,679 + DVU2022 0.13 +0.9
2,101,687 - DVU2022 0.13 -0.5
2,101,687 - DVU2022 0.13 +1.7

Or see this region's nucleotide sequence