Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1995

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrsbV and DVU1996 are separated by 598 nucleotidesDVU1996 and DORF14879 are separated by 1 nucleotides DVU1995: rsbV - anti-anti-sigma factor (TIGR), at 2,076,256 to 2,076,585 rsbV DVU1996: DVU1996 - quaternary ammonium compound-resistance protein QacC, putative (TIGR), at 2,077,184 to 2,077,513 DVU1996 DORF14879: DORF14879 - no description, at 2,077,515 to 2,079,059 DORF14879 Position (kb) 2076 2077Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2075.274 kb on - strandat 2075.353 kb on + strandat 2075.418 kb on - strandat 2075.440 kb on + strandat 2075.443 kb on - strandat 2075.452 kb on + strandat 2075.452 kb on + strandat 2075.460 kb on - strandat 2075.460 kb on - strandat 2075.574 kb on - strandat 2075.618 kb on + strandat 2075.618 kb on + strandat 2075.712 kb on + strandat 2075.719 kb on + strandat 2075.727 kb on - strandat 2075.790 kb on + strandat 2075.853 kb on - strandat 2075.859 kb on + strandat 2075.859 kb on + strandat 2075.860 kb on + strandat 2075.930 kb on + strandat 2075.930 kb on + strandat 2075.930 kb on + strandat 2075.938 kb on - strandat 2075.942 kb on + strandat 2075.980 kb on - strandat 2076.048 kb on + strandat 2076.199 kb on - strandat 2076.261 kb on - strandat 2076.292 kb on - strand, within rsbVat 2076.330 kb on - strand, within rsbVat 2076.414 kb on - strand, within rsbVat 2076.424 kb on + strand, within rsbVat 2076.424 kb on + strand, within rsbVat 2076.444 kb on - strand, within rsbVat 2076.444 kb on - strand, within rsbVat 2076.464 kb on - strand, within rsbVat 2076.513 kb on - strand, within rsbVat 2076.585 kb on + strandat 2076.603 kb on - strandat 2076.619 kb on + strandat 2076.629 kb on - strandat 2076.645 kb on - strandat 2076.670 kb on - strandat 2076.813 kb on + strandat 2076.857 kb on - strandat 2076.857 kb on - strandat 2076.902 kb on - strandat 2076.902 kb on - strandat 2076.960 kb on + strandat 2077.062 kb on - strandat 2077.083 kb on - strandat 2077.244 kb on + strand, within DVU1996at 2077.379 kb on + strand, within DVU1996at 2077.470 kb on + strand, within DVU1996at 2077.479 kb on - strand, within DVU1996

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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2,075,274 - -0.3
2,075,353 + +0.2
2,075,418 - +3.2
2,075,440 + -1.1
2,075,443 - -0.6
2,075,452 + -0.8
2,075,452 + +0.7
2,075,460 - +0.9
2,075,460 - -1.5
2,075,574 - -1.6
2,075,618 + +1.5
2,075,618 + -1.9
2,075,712 + -0.6
2,075,719 + -0.5
2,075,727 - -1.7
2,075,790 + -0.4
2,075,853 - -0.8
2,075,859 + +0.6
2,075,859 + -2.9
2,075,860 + +1.1
2,075,930 + +0.8
2,075,930 + +0.7
2,075,930 + +0.2
2,075,938 - +1.8
2,075,942 + +2.5
2,075,980 - -1.0
2,076,048 + -1.1
2,076,199 - -0.2
2,076,261 - +2.3
2,076,292 - rsbV DVU1995 0.11 +0.4
2,076,330 - rsbV DVU1995 0.22 -2.1
2,076,414 - rsbV DVU1995 0.48 -0.2
2,076,424 + rsbV DVU1995 0.51 -0.5
2,076,424 + rsbV DVU1995 0.51 -1.2
2,076,444 - rsbV DVU1995 0.57 +2.5
2,076,444 - rsbV DVU1995 0.57 -0.8
2,076,464 - rsbV DVU1995 0.63 -1.3
2,076,513 - rsbV DVU1995 0.78 -0.2
2,076,585 + -0.6
2,076,603 - +0.6
2,076,619 + -0.1
2,076,629 - -0.7
2,076,645 - +1.2
2,076,670 - -3.5
2,076,813 + -1.0
2,076,857 - -0.8
2,076,857 - -2.8
2,076,902 - -1.1
2,076,902 - -1.5
2,076,960 + +0.7
2,077,062 - +0.7
2,077,083 - -0.1
2,077,244 + DVU1996 0.18 -0.3
2,077,379 + DVU1996 0.59 +2.1
2,077,470 + DVU1996 0.87 -0.7
2,077,479 - DVU1996 0.89 +0.7

Or see this region's nucleotide sequence