Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1782

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1780 and DVU1781 are separated by 184 nucleotidesDVU1781 and DVU1782 overlap by 8 nucleotidesDVU1782 and DVU1783 overlap by 8 nucleotidesDVU1783 and DVU1784 are separated by 171 nucleotides DVU1780: DVU1780 - conserved hypothetical protein (TIGR), at 1,843,438 to 1,843,743 DVU1780 DVU1781: DVU1781 - conserved hypothetical protein (TIGR), at 1,843,928 to 1,844,593 DVU1781 DVU1782: DVU1782 - iron-sulfur cluster-binding protein (TIGR), at 1,844,586 to 1,846,013 DVU1782 DVU1783: DVU1783 - cysteine-rich domain protein (TIGR), at 1,846,006 to 1,846,758 DVU1783 DVU1784: DVU1784 - oxidoreductase, short-chain dehydrogenase/reductase family (TIGR), at 1,846,930 to 1,847,691 DVU1784 Position (kb) 1844 1845 1846 1847Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1843.605 kb on + strand, within DVU1780at 1843.611 kb on + strand, within DVU1780at 1843.693 kb on - strand, within DVU1780at 1843.712 kb on - strand, within DVU1780at 1843.714 kb on - strandat 1843.722 kb on - strandat 1843.722 kb on - strandat 1843.754 kb on + strandat 1843.799 kb on + strandat 1843.909 kb on + strandat 1843.971 kb on + strandat 1844.002 kb on + strand, within DVU1781at 1844.011 kb on + strand, within DVU1781at 1844.068 kb on + strand, within DVU1781at 1844.079 kb on + strand, within DVU1781at 1844.113 kb on - strand, within DVU1781at 1844.168 kb on + strand, within DVU1781at 1844.176 kb on - strand, within DVU1781at 1844.201 kb on - strand, within DVU1781at 1844.303 kb on - strand, within DVU1781at 1844.319 kb on + strand, within DVU1781at 1844.345 kb on + strand, within DVU1781at 1844.388 kb on + strand, within DVU1781at 1844.409 kb on + strand, within DVU1781at 1844.444 kb on - strand, within DVU1781at 1844.596 kb on - strandat 1844.596 kb on - strandat 1844.618 kb on + strandat 1844.664 kb on + strandat 1844.681 kb on + strandat 1844.681 kb on + strandat 1844.691 kb on + strandat 1844.759 kb on - strand, within DVU1782at 1844.795 kb on - strand, within DVU1782at 1844.841 kb on + strand, within DVU1782at 1844.865 kb on + strand, within DVU1782at 1844.891 kb on + strand, within DVU1782at 1844.914 kb on + strand, within DVU1782at 1845.044 kb on - strand, within DVU1782at 1845.088 kb on + strand, within DVU1782at 1845.098 kb on + strand, within DVU1782at 1845.106 kb on - strand, within DVU1782at 1845.300 kb on + strand, within DVU1782at 1845.476 kb on - strand, within DVU1782at 1845.558 kb on + strand, within DVU1782at 1845.599 kb on + strand, within DVU1782at 1845.692 kb on + strand, within DVU1782at 1845.728 kb on - strand, within DVU1782at 1845.736 kb on - strand, within DVU1782at 1845.803 kb on + strand, within DVU1782at 1845.822 kb on - strand, within DVU1782at 1845.855 kb on - strand, within DVU1782at 1845.860 kb on + strand, within DVU1782at 1845.868 kb on - strand, within DVU1782at 1845.929 kb on - strandat 1845.998 kb on - strandat 1846.033 kb on - strandat 1846.048 kb on + strandat 1846.048 kb on + strandat 1846.053 kb on + strandat 1846.243 kb on + strand, within DVU1783at 1846.314 kb on + strand, within DVU1783at 1846.355 kb on + strand, within DVU1783at 1846.491 kb on - strand, within DVU1783at 1846.528 kb on - strand, within DVU1783at 1846.618 kb on - strand, within DVU1783at 1846.633 kb on + strand, within DVU1783at 1846.730 kb on + strandat 1846.738 kb on - strandat 1846.738 kb on - strandat 1846.768 kb on - strandat 1846.787 kb on + strandat 1846.886 kb on + strandat 1846.914 kb on + strandat 1846.929 kb on - strandat 1846.930 kb on + strandat 1846.938 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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1,843,605 + DVU1780 0.55 -1.3
1,843,611 + DVU1780 0.57 -0.2
1,843,693 - DVU1780 0.83 -0.2
1,843,712 - DVU1780 0.90 +0.3
1,843,714 - +0.9
1,843,722 - -3.0
1,843,722 - -0.8
1,843,754 + -1.9
1,843,799 + -1.2
1,843,909 + -0.5
1,843,971 + -0.2
1,844,002 + DVU1781 0.11 +0.2
1,844,011 + DVU1781 0.12 -2.5
1,844,068 + DVU1781 0.21 -0.7
1,844,079 + DVU1781 0.23 +3.8
1,844,113 - DVU1781 0.28 -0.5
1,844,168 + DVU1781 0.36 -0.5
1,844,176 - DVU1781 0.37 +0.2
1,844,201 - DVU1781 0.41 -0.1
1,844,303 - DVU1781 0.56 +2.1
1,844,319 + DVU1781 0.59 -1.7
1,844,345 + DVU1781 0.63 +1.0
1,844,388 + DVU1781 0.69 +0.4
1,844,409 + DVU1781 0.72 +0.1
1,844,444 - DVU1781 0.77 -0.4
1,844,596 - -0.5
1,844,596 - -0.6
1,844,618 + -0.7
1,844,664 + -0.3
1,844,681 + -0.7
1,844,681 + -0.4
1,844,691 + -2.3
1,844,759 - DVU1782 0.12 -0.3
1,844,795 - DVU1782 0.15 -0.2
1,844,841 + DVU1782 0.18 -0.9
1,844,865 + DVU1782 0.20 -0.1
1,844,891 + DVU1782 0.21 -1.3
1,844,914 + DVU1782 0.23 -1.1
1,845,044 - DVU1782 0.32 -0.3
1,845,088 + DVU1782 0.35 -0.1
1,845,098 + DVU1782 0.36 -1.3
1,845,106 - DVU1782 0.36 -0.8
1,845,300 + DVU1782 0.50 +1.6
1,845,476 - DVU1782 0.62 +1.2
1,845,558 + DVU1782 0.68 -0.8
1,845,599 + DVU1782 0.71 -0.4
1,845,692 + DVU1782 0.77 -0.3
1,845,728 - DVU1782 0.80 -0.0
1,845,736 - DVU1782 0.81 -1.2
1,845,803 + DVU1782 0.85 -1.5
1,845,822 - DVU1782 0.87 -1.1
1,845,855 - DVU1782 0.89 +1.6
1,845,860 + DVU1782 0.89 -1.3
1,845,868 - DVU1782 0.90 -0.5
1,845,929 - +1.5
1,845,998 - -1.0
1,846,033 - -0.8
1,846,048 + -0.4
1,846,048 + -0.0
1,846,053 + -1.1
1,846,243 + DVU1783 0.31 +2.5
1,846,314 + DVU1783 0.41 -0.4
1,846,355 + DVU1783 0.46 -1.5
1,846,491 - DVU1783 0.64 -1.0
1,846,528 - DVU1783 0.69 -1.7
1,846,618 - DVU1783 0.81 -0.4
1,846,633 + DVU1783 0.83 +3.5
1,846,730 + +0.7
1,846,738 - -1.2
1,846,738 - +0.1
1,846,768 - -0.0
1,846,787 + +0.1
1,846,886 + -1.5
1,846,914 + +1.3
1,846,929 - +1.6
1,846,930 + -1.6
1,846,938 - -0.6

Or see this region's nucleotide sequence