Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1407

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpurM and DVU1407 are separated by 316 nucleotidesDVU1407 and DVU1408 are separated by 157 nucleotidesDVU1408 and DVU1409 are separated by 17 nucleotides DVU1406: purM - phosphoribosylformylglycinamidine cyclo-ligase (TIGR), at 1,474,610 to 1,475,662 purM DVU1407: DVU1407 - radical SAM domain protein (TIGR), at 1,475,979 to 1,477,454 DVU1407 DVU1408: DVU1408 - hypothetical protein (TIGR), at 1,477,612 to 1,477,914 DVU1408 DVU1409: DVU1409 - hypothetical protein (TIGR), at 1,477,932 to 1,478,396 DVU1409 Position (kb) 1475 1476 1477 1478Strain fitness (log2 ratio) -2 -1 0 1 2at 1475.656 kb on + strandat 1475.740 kb on + strandat 1475.781 kb on - strandat 1475.803 kb on + strandat 1475.861 kb on + strandat 1475.897 kb on - strandat 1475.990 kb on - strandat 1476.081 kb on + strandat 1476.101 kb on + strandat 1476.176 kb on + strand, within DVU1407at 1476.275 kb on + strand, within DVU1407at 1476.275 kb on + strand, within DVU1407at 1476.299 kb on + strand, within DVU1407at 1476.299 kb on + strand, within DVU1407at 1476.768 kb on - strand, within DVU1407at 1476.785 kb on + strand, within DVU1407at 1476.831 kb on - strand, within DVU1407at 1476.841 kb on + strand, within DVU1407at 1477.005 kb on - strand, within DVU1407at 1477.156 kb on - strand, within DVU1407at 1477.405 kb on + strandat 1477.662 kb on - strand, within DVU1408at 1477.662 kb on - strand, within DVU1408at 1477.730 kb on + strand, within DVU1408at 1477.748 kb on + strand, within DVU1408at 1477.756 kb on - strand, within DVU1408at 1477.765 kb on + strand, within DVU1408at 1477.790 kb on + strand, within DVU1408at 1477.808 kb on + strand, within DVU1408at 1477.808 kb on + strand, within DVU1408at 1477.816 kb on - strand, within DVU1408at 1477.940 kb on - strandat 1478.094 kb on + strand, within DVU1409at 1478.137 kb on - strand, within DVU1409at 1478.440 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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1,475,656 + -0.5
1,475,740 + +0.4
1,475,781 - +2.5
1,475,803 + +0.6
1,475,861 + +0.4
1,475,897 - -0.6
1,475,990 - +0.4
1,476,081 + -0.4
1,476,101 + +1.5
1,476,176 + DVU1407 0.13 -1.4
1,476,275 + DVU1407 0.20 -0.6
1,476,275 + DVU1407 0.20 -1.0
1,476,299 + DVU1407 0.22 -2.1
1,476,299 + DVU1407 0.22 -1.2
1,476,768 - DVU1407 0.53 -1.9
1,476,785 + DVU1407 0.55 +0.1
1,476,831 - DVU1407 0.58 +0.9
1,476,841 + DVU1407 0.58 -0.3
1,477,005 - DVU1407 0.70 -1.8
1,477,156 - DVU1407 0.80 -0.1
1,477,405 + -1.5
1,477,662 - DVU1408 0.17 -0.4
1,477,662 - DVU1408 0.17 +1.7
1,477,730 + DVU1408 0.39 -0.9
1,477,748 + DVU1408 0.45 -0.9
1,477,756 - DVU1408 0.48 -1.2
1,477,765 + DVU1408 0.50 -0.9
1,477,790 + DVU1408 0.59 -0.9
1,477,808 + DVU1408 0.65 -0.0
1,477,808 + DVU1408 0.65 +1.5
1,477,816 - DVU1408 0.67 +1.1
1,477,940 - -1.2
1,478,094 + DVU1409 0.35 +0.4
1,478,137 - DVU1409 0.44 -1.8
1,478,440 + +2.5

Or see this region's nucleotide sequence