Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004827

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,040,373	-		ABIE53_004826	0.58	-1.6
1,040,373	-		ABIE53_004826	0.58	-2.5
1,040,447	+		ABIE53_004826	0.61	-1.8
1,040,447	+		ABIE53_004826	0.61	-1.6
1,040,447	+		ABIE53_004826	0.61	-1.6
1,040,447	+		ABIE53_004826	0.61	+0.2
1,040,447	+		ABIE53_004826	0.61	-2.3
1,040,447	+		ABIE53_004826	0.61	-1.1
1,040,448	-		ABIE53_004826	0.61	-1.6
1,040,538	-		ABIE53_004826	0.65	-1.1
1,040,538	-		ABIE53_004826	0.65	-1.4
1,040,729	+		ABIE53_004826	0.74	+0.2
1,040,729	+		ABIE53_004826	0.74	-6.2
1,040,729	+		ABIE53_004826	0.74	+1.2
1,040,730	-		ABIE53_004826	0.74	-3.0
1,040,730	-		ABIE53_004826	0.74	-0.4
1,040,730	-		ABIE53_004826	0.74	-1.8
1,040,730	-		ABIE53_004826	0.74	+0.4
1,040,730	-		ABIE53_004826	0.74	-1.1
1,040,730	-		ABIE53_004826	0.74	-3.7
1,040,730	-		ABIE53_004826	0.74	-0.8
1,040,736	-		ABIE53_004826	0.74	-3.2
1,040,736	-		ABIE53_004826	0.74	-1.4
1,040,736	-		ABIE53_004826	0.74	-0.8
1,040,997	-		ABIE53_004826	0.86	+0.8
1,040,997	-		ABIE53_004826	0.86	-2.3
1,041,002	+		ABIE53_004826	0.86	-3.2
1,041,002	+		ABIE53_004826	0.86	-1.5
1,041,003	-		ABIE53_004826	0.87	-2.3
1,041,003	-		ABIE53_004826	0.87	-2.0
1,041,003	-		ABIE53_004826	0.87	-1.4
1,041,003	-		ABIE53_004826	0.87	-2.4
1,041,006	+		ABIE53_004826	0.87	-3.3
1,041,006	+		ABIE53_004826	0.87	-2.0
1,041,006	+		ABIE53_004826	0.87	-1.4
1,041,006	+		ABIE53_004826	0.87	-0.8
1,041,006	+		ABIE53_004826	0.87	-3.7
1,041,007	-		ABIE53_004826	0.87	+1.2
1,041,007	-		ABIE53_004826	0.87	-2.3
1,041,007	-		ABIE53_004826	0.87	-5.0
1,041,007	-		ABIE53_004826	0.87	+1.5
1,041,453	+				-3.7
1,041,453	+				-0.8
1,041,466	-				-2.3
1,041,559	-				+0.1
1,041,675	+		ABIE53_004827	0.11	-1.1
1,042,128	+		ABIE53_004827	0.24	-1.2
1,042,128	+		ABIE53_004827	0.24	-0.8
1,042,129	-		ABIE53_004827	0.24	-1.8
1,042,224	+		ABIE53_004827	0.27	+2.4
1,042,224	+		ABIE53_004827	0.27	+1.5
1,042,288	+		ABIE53_004827	0.29	-2.1
1,042,288	+		ABIE53_004827	0.29	-1.1
1,042,288	+		ABIE53_004827	0.29	+1.9
1,042,288	+		ABIE53_004827	0.29	-1.4
1,042,368	+		ABIE53_004827	0.31	-1.6
1,042,368	+		ABIE53_004827	0.31	-1.9
1,042,740	+		ABIE53_004827	0.42	-1.3
1,042,740	+		ABIE53_004827	0.42	-0.4
1,042,740	+		ABIE53_004827	0.42	-0.4
1,042,741	-		ABIE53_004827	0.42	-1.4
1,042,741	-		ABIE53_004827	0.42	-2.1
1,043,043	+		ABIE53_004827	0.51	-1.4
1,043,064	+		ABIE53_004827	0.51	-0.4
1,043,064	+		ABIE53_004827	0.51	-2.7
1,043,064	+		ABIE53_004827	0.51	-0.4
1,043,064	+		ABIE53_004827	0.51	-1.4
1,043,064	+		ABIE53_004827	0.51	-1.9
1,043,064	+		ABIE53_004827	0.51	-0.4
1,043,065	-		ABIE53_004827	0.51	-2.7
1,043,065	-		ABIE53_004827	0.51	-0.8
1,043,065	-		ABIE53_004827	0.51	-1.4
1,043,065	-		ABIE53_004827	0.51	+0.5
1,043,065	-		ABIE53_004827	0.51	-1.1
1,043,065	-		ABIE53_004827	0.51	-2.0
1,043,221	-		ABIE53_004827	0.56	-0.9
1,043,221	-		ABIE53_004827	0.56	-1.8
1,043,376	+		ABIE53_004827	0.60	-1.1
1,043,526	+		ABIE53_004827	0.65	+1.2
1,043,527	-		ABIE53_004827	0.65	-2.9
1,043,529	+		ABIE53_004827	0.65	+0.2
1,043,529	+		ABIE53_004827	0.65	-3.3
1,043,529	+		ABIE53_004827	0.65	+0.2
1,043,530	-		ABIE53_004827	0.65	-1.6
1,043,530	-		ABIE53_004827	0.65	+1.1
1,043,530	-		ABIE53_004827	0.65	-2.5
1,043,530	-		ABIE53_004827	0.65	-2.5
1,043,530	-		ABIE53_004827	0.65	-1.4
1,043,530	-		ABIE53_004827	0.65	+0.2
1,043,661	+		ABIE53_004827	0.68	+2.8
1,043,661	+		ABIE53_004827	0.68	+1.6
1,043,661	+		ABIE53_004827	0.68	-3.0
1,043,661	+		ABIE53_004827	0.68	+2.4
1,043,661	+		ABIE53_004827	0.68	-1.6
1,043,661	+		ABIE53_004827	0.68	+0.2
1,043,661	+		ABIE53_004827	0.68	+0.2
1,043,661	+		ABIE53_004827	0.68	-0.8
1,043,661	+		ABIE53_004827	0.68	+0.2
1,043,661	+		ABIE53_004827	0.68	-1.1
1,043,662	-		ABIE53_004827	0.68	-2.1
1,043,662	-		ABIE53_004827	0.68	-3.7
1,043,662	-		ABIE53_004827	0.68	-2.6
1,043,662	-		ABIE53_004827	0.68	-1.1
1,043,662	-		ABIE53_004827	0.68	-1.1
1,043,676	+		ABIE53_004827	0.69	-0.0
1,043,676	+		ABIE53_004827	0.69	-0.4
1,043,676	+		ABIE53_004827	0.69	-1.4
1,043,676	+		ABIE53_004827	0.69	-2.8
1,043,677	-		ABIE53_004827	0.69	-1.4
1,043,823	+		ABIE53_004827	0.73	-1.4
1,043,823	+		ABIE53_004827	0.73	-3.3
1,043,823	+		ABIE53_004827	0.73	-0.4
1,043,823	+		ABIE53_004827	0.73	+0.2
1,043,823	+		ABIE53_004827	0.73	-1.6
1,043,823	+		ABIE53_004827	0.73	-0.4
1,043,824	-		ABIE53_004827	0.73	-0.4
1,043,824	-		ABIE53_004827	0.73	-1.6
1,043,824	-		ABIE53_004827	0.73	-2.5
1,043,940	+		ABIE53_004827	0.76	+1.4
1,043,941	-		ABIE53_004827	0.76	+1.2
1,044,068	-		ABIE53_004827	0.80	-1.1
1,044,148	-		ABIE53_004827	0.82	-0.8
1,044,162	+		ABIE53_004827	0.83	+0.2
1,044,163	-		ABIE53_004827	0.83	+0.9
1,044,163	-		ABIE53_004827	0.83	-1.4
1,044,163	-		ABIE53_004827	0.83	-2.1
1,044,163	-		ABIE53_004827	0.83	-0.4
1,044,163	-		ABIE53_004827	0.83	-1.0
1,044,165	+		ABIE53_004827	0.83	-3.4
1,044,165	+		ABIE53_004827	0.83	-1.6
1,044,220	+		ABIE53_004827	0.85	-1.1
1,044,220	+		ABIE53_004827	0.85	-0.8
1,044,220	+		ABIE53_004827	0.85	-1.1
1,044,221	-		ABIE53_004827	0.85	-1.1
1,044,221	-		ABIE53_004827	0.85	-1.1
1,044,221	-		ABIE53_004827	0.85	+0.2
1,044,221	-		ABIE53_004827	0.85	-0.4
1,044,237	+		ABIE53_004827	0.85	-0.8
1,044,238	-		ABIE53_004827	0.85	-1.6
1,044,250	+		ABIE53_004827	0.85	-1.8
1,044,264	+		ABIE53_004827	0.86	+0.6
1,044,264	+		ABIE53_004827	0.86	-1.1
1,044,264	+		ABIE53_004827	0.86	-0.4
1,044,264	+		ABIE53_004827	0.86	-1.6
1,044,264	+		ABIE53_004827	0.86	-0.8
1,044,264	+		ABIE53_004827	0.86	-1.0
1,044,264	+		ABIE53_004827	0.86	-3.6
1,044,264	+		ABIE53_004827	0.86	-1.8
1,044,264	+		ABIE53_004827	0.86	-1.1
1,044,265	-		ABIE53_004827	0.86	-2.1
1,044,265	-		ABIE53_004827	0.86	-0.4
1,044,265	-		ABIE53_004827	0.86	-2.5
1,044,265	-		ABIE53_004827	0.86	-2.5
1,044,265	-		ABIE53_004827	0.86	-2.5
1,044,340	+		ABIE53_004827	0.88	-4.6
1,044,341	-		ABIE53_004827	0.88	+1.2
1,044,344	+		ABIE53_004827	0.88	-0.7
1,044,344	+		ABIE53_004827	0.88	-3.0
1,044,344	+		ABIE53_004827	0.88	-1.1
1,044,345	-		ABIE53_004827	0.88	+0.2
1,044,345	-		ABIE53_004827	0.88	-1.4
1,044,345	-		ABIE53_004827	0.88	-1.4
1,044,345	-		ABIE53_004827	0.88	-0.8
1,044,528	+				+0.1
1,044,528	+				-0.3
1,044,528	+				-1.0
1,044,528	+				-1.6
1,044,529	-				-1.1
1,044,529	-				+0.2
1,044,609	+				-0.7
1,044,609	+				-2.7
1,044,609	+				-0.1
1,044,609	+				-0.8
1,044,610	-				-3.3
1,044,610	-				-4.3
1,044,754	+				-0.2
1,044,754	+				-1.1
1,044,755	-				-2.8
1,044,774	+				+1.1
1,045,083	+				+0.7
1,045,256	+		ABIE53_004828	0.15	-0.8
1,045,257	-		ABIE53_004828	0.15	-1.4
1,045,257	-		ABIE53_004828	0.15	-0.8
1,045,257	-		ABIE53_004828	0.15	-1.4
1,045,274	+		ABIE53_004828	0.15	-0.7
1,045,274	+		ABIE53_004828	0.15	-0.1
1,045,275	-		ABIE53_004828	0.15	-0.8
1,045,275	-		ABIE53_004828	0.15	-4.2
1,045,309	+		ABIE53_004828	0.16	-3.2
1,045,309	+		ABIE53_004828	0.16	-0.2
1,045,309	+		ABIE53_004828	0.16	+1.2
1,045,309	+		ABIE53_004828	0.16	-0.4
1,045,309	+		ABIE53_004828	0.16	-2.4
1,045,310	-		ABIE53_004828	0.16	-1.6
1,045,310	-		ABIE53_004828	0.16	-1.4
1,045,310	-		ABIE53_004828	0.16	-1.4
1,045,310	-		ABIE53_004828	0.16	-2.1
1,045,310	-		ABIE53_004828	0.16	-3.6
1,045,310	-		ABIE53_004828	0.16	+0.2
1,045,310	-		ABIE53_004828	0.16	-0.8
1,045,310	-		ABIE53_004828	0.16	-2.6
1,045,323	+		ABIE53_004828	0.17	+0.1
1,045,325	+		ABIE53_004828	0.17	-1.3
1,045,325	+		ABIE53_004828	0.17	-1.4
1,045,325	+		ABIE53_004828	0.17	-0.7
1,045,325	+		ABIE53_004828	0.17	-3.1
1,045,326	-		ABIE53_004828	0.17	-2.5
1,045,326	-		ABIE53_004828	0.17	-4.7
1,045,326	-		ABIE53_004828	0.17	-2.7
1,045,326	-		ABIE53_004828	0.17	-1.4
1,045,326	-		ABIE53_004828	0.17	-2.0
1,045,426	-		ABIE53_004828	0.19	-1.4
1,045,426	-		ABIE53_004828	0.19	+0.2
1,045,449	-		ABIE53_004828	0.20	-1.6
1,045,526	+		ABIE53_004828	0.22	-1.1
1,045,526	+		ABIE53_004828	0.22	-0.8
1,045,526	+		ABIE53_004828	0.22	+0.4
1,045,526	+		ABIE53_004828	0.22	-1.1
1,045,526	+		ABIE53_004828	0.22	-1.1
1,045,526	+		ABIE53_004828	0.22	-1.4
1,045,526	+		ABIE53_004828	0.22	-2.7
1,045,527	-		ABIE53_004828	0.22	-4.9
1,045,527	-		ABIE53_004828	0.22	-0.4
1,045,527	-		ABIE53_004828	0.22	-2.3
1,045,527	-		ABIE53_004828	0.22	-2.5
1,045,527	-		ABIE53_004828	0.22	-2.7
1,045,527	-		ABIE53_004828	0.22	-2.3
1,045,527	-		ABIE53_004828	0.22	-2.7
1,045,527	-		ABIE53_004828	0.22	-0.8
1,045,532	+		ABIE53_004828	0.23	+2.4
1,045,532	+		ABIE53_004828	0.23	-0.8
1,045,533	-		ABIE53_004828	0.23	-1.8
1,045,533	-		ABIE53_004828	0.23	-1.4
1,045,533	-		ABIE53_004828	0.23	-0.8
1,045,533	-		ABIE53_004828	0.23	-2.8
1,045,533	-		ABIE53_004828	0.23	-4.7
1,045,693	-		ABIE53_004828	0.27	-2.6