Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003895 and ABIE53_003896 overlap by 1 nucleotides ABIE53_003896 and ABIE53_003897 overlap by 41 nucleotides ABIE53_003897 and ABIE53_003898 are separated by 57 nucleotides ABIE53_003898 and ABIE53_003899 are separated by 244 nucleotides
ABIE53_003895: ABIE53_003895 - ribose transport system ATP-binding protein, at 32,462 to 33,979
_003895
ABIE53_003896: ABIE53_003896 - ABC-type sugar transport system substrate-binding protein, at 33,979 to 34,500
_003896
ABIE53_003897: ABIE53_003897 - ABC-type sugar transport system substrate-binding protein, at 34,460 to 34,921
_003897
ABIE53_003898: ABIE53_003898 - ribose transport system permease protein, at 34,979 to 35,980
_003898
ABIE53_003899: ABIE53_003899 - nucleoside-diphosphate-sugar epimerase, at 36,225 to 37,124
_003899
Position (kb) 34
35
36 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 33.990 kb on - strand at 34.137 kb on - strand, within ABIE53_003896 at 34.137 kb on - strand, within ABIE53_003896 at 34.380 kb on - strand, within ABIE53_003896 at 34.536 kb on + strand, within ABIE53_003897 at 34.536 kb on + strand, within ABIE53_003897 at 34.536 kb on + strand, within ABIE53_003897 at 34.536 kb on + strand, within ABIE53_003897 at 34.537 kb on - strand, within ABIE53_003897 at 34.537 kb on - strand, within ABIE53_003897 at 34.537 kb on - strand, within ABIE53_003897 at 34.694 kb on + strand, within ABIE53_003897 at 34.694 kb on + strand, within ABIE53_003897 at 34.695 kb on - strand, within ABIE53_003897 at 34.737 kb on + strand, within ABIE53_003897 at 34.737 kb on + strand, within ABIE53_003897 at 34.737 kb on + strand, within ABIE53_003897 at 34.831 kb on + strand, within ABIE53_003897 at 34.832 kb on - strand, within ABIE53_003897 at 34.904 kb on - strand at 34.956 kb on + strand at 34.972 kb on - strand at 34.972 kb on - strand at 34.981 kb on - strand at 35.061 kb on + strand at 35.065 kb on + strand at 35.066 kb on - strand at 35.072 kb on - strand at 35.231 kb on + strand, within ABIE53_003898 at 35.289 kb on + strand, within ABIE53_003898 at 35.290 kb on - strand, within ABIE53_003898 at 35.290 kb on - strand, within ABIE53_003898 at 35.361 kb on + strand, within ABIE53_003898 at 35.361 kb on + strand, within ABIE53_003898 at 35.362 kb on - strand, within ABIE53_003898 at 35.362 kb on - strand, within ABIE53_003898 at 35.456 kb on - strand, within ABIE53_003898 at 35.457 kb on + strand, within ABIE53_003898 at 35.526 kb on + strand, within ABIE53_003898 at 35.526 kb on + strand, within ABIE53_003898 at 35.526 kb on + strand, within ABIE53_003898 at 35.526 kb on + strand, within ABIE53_003898 at 35.526 kb on + strand, within ABIE53_003898 at 35.526 kb on + strand, within ABIE53_003898 at 35.527 kb on - strand, within ABIE53_003898 at 35.527 kb on - strand, within ABIE53_003898 at 35.585 kb on + strand, within ABIE53_003898 at 35.586 kb on - strand, within ABIE53_003898 at 35.586 kb on - strand, within ABIE53_003898 at 35.746 kb on + strand, within ABIE53_003898 at 35.969 kb on + strand at 35.970 kb on - strand at 35.996 kb on - strand at 35.996 kb on - strand at 36.015 kb on + strand at 36.015 kb on + strand at 36.015 kb on + strand at 36.015 kb on + strand at 36.016 kb on - strand at 36.016 kb on - strand at 36.016 kb on - strand at 36.016 kb on - strand at 36.016 kb on - strand at 36.016 kb on - strand at 36.054 kb on - strand at 36.054 kb on - strand at 36.077 kb on + strand at 36.078 kb on - strand at 36.078 kb on - strand at 36.202 kb on - strand at 36.210 kb on + strand at 36.210 kb on + strand at 36.210 kb on + strand at 36.241 kb on + strand at 36.388 kb on + strand, within ABIE53_003899 at 36.388 kb on + strand, within ABIE53_003899 at 36.388 kb on + strand, within ABIE53_003899 at 36.540 kb on + strand, within ABIE53_003899 at 36.540 kb on + strand, within ABIE53_003899 at 36.540 kb on + strand, within ABIE53_003899 at 36.541 kb on - strand, within ABIE53_003899 at 36.541 kb on - strand, within ABIE53_003899 at 36.541 kb on - strand, within ABIE53_003899 at 36.541 kb on - strand, within ABIE53_003899 at 36.610 kb on - strand, within ABIE53_003899 at 36.693 kb on + strand, within ABIE53_003899 at 36.694 kb on - strand, within ABIE53_003899 at 36.762 kb on + strand, within ABIE53_003899 at 36.762 kb on + strand, within ABIE53_003899 at 36.762 kb on + strand, within ABIE53_003899 at 36.861 kb on + strand, within ABIE53_003899 at 36.862 kb on - strand, within ABIE53_003899 at 36.862 kb on - strand, within ABIE53_003899 at 36.862 kb on - strand, within ABIE53_003899 at 36.864 kb on - strand, within ABIE53_003899 at 36.864 kb on - strand, within ABIE53_003899
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 33,990 - -2.2 34,137 - ABIE53_003896 0.30 +2.7 34,137 - ABIE53_003896 0.30 -0.7 34,380 - ABIE53_003896 0.77 -0.5 34,536 + ABIE53_003897 0.16 -0.4 34,536 + ABIE53_003897 0.16 -0.2 34,536 + ABIE53_003897 0.16 +0.9 34,536 + ABIE53_003897 0.16 -0.9 34,537 - ABIE53_003897 0.17 -3.7 34,537 - ABIE53_003897 0.17 +0.7 34,537 - ABIE53_003897 0.17 +1.1 34,694 + ABIE53_003897 0.51 -1.0 34,694 + ABIE53_003897 0.51 -1.6 34,695 - ABIE53_003897 0.51 -1.0 34,737 + ABIE53_003897 0.60 +0.5 34,737 + ABIE53_003897 0.60 +2.4 34,737 + ABIE53_003897 0.60 +3.6 34,831 + ABIE53_003897 0.80 -1.0 34,832 - ABIE53_003897 0.81 +1.1 34,904 - +0.2 34,956 + -1.2 34,972 - +1.1 34,972 - +0.2 34,981 - -2.2 35,061 + -0.4 35,065 + -1.5 35,066 - +0.6 35,072 - -1.7 35,231 + ABIE53_003898 0.25 +2.5 35,289 + ABIE53_003898 0.31 +3.7 35,290 - ABIE53_003898 0.31 -1.5 35,290 - ABIE53_003898 0.31 -3.4 35,361 + ABIE53_003898 0.38 +0.4 35,361 + ABIE53_003898 0.38 +0.1 35,362 - ABIE53_003898 0.38 +1.1 35,362 - ABIE53_003898 0.38 -0.9 35,456 - ABIE53_003898 0.48 -2.1 35,457 + ABIE53_003898 0.48 -4.4 35,526 + ABIE53_003898 0.55 +0.1 35,526 + ABIE53_003898 0.55 -1.5 35,526 + ABIE53_003898 0.55 +1.1 35,526 + ABIE53_003898 0.55 -0.9 35,526 + ABIE53_003898 0.55 +0.1 35,526 + ABIE53_003898 0.55 +1.1 35,527 - ABIE53_003898 0.55 +0.8 35,527 - ABIE53_003898 0.55 +1.8 35,585 + ABIE53_003898 0.60 -0.2 35,586 - ABIE53_003898 0.61 -1.1 35,586 - ABIE53_003898 0.61 +0.1 35,746 + ABIE53_003898 0.77 +2.8 35,969 + +1.2 35,970 - -1.5 35,996 - -2.4 35,996 - +1.0 36,015 + -0.9 36,015 + +1.5 36,015 + -4.2 36,015 + -2.2 36,016 - +1.4 36,016 - +0.1 36,016 - +0.4 36,016 - -1.3 36,016 - -0.1 36,016 - -0.9 36,054 - +1.8 36,054 - +1.2 36,077 + -2.1 36,078 - +0.6 36,078 - -2.5 36,202 - -1.0 36,210 + +2.4 36,210 + -2.4 36,210 + +1.2 36,241 + -0.1 36,388 + ABIE53_003899 0.18 -0.5 36,388 + ABIE53_003899 0.18 +0.1 36,388 + ABIE53_003899 0.18 -1.7 36,540 + ABIE53_003899 0.35 -0.9 36,540 + ABIE53_003899 0.35 -1.7 36,540 + ABIE53_003899 0.35 +2.8 36,541 - ABIE53_003899 0.35 -1.5 36,541 - ABIE53_003899 0.35 -2.6 36,541 - ABIE53_003899 0.35 -0.9 36,541 - ABIE53_003899 0.35 -1.9 36,610 - ABIE53_003899 0.43 -0.5 36,693 + ABIE53_003899 0.52 -1.0 36,694 - ABIE53_003899 0.52 +0.8 36,762 + ABIE53_003899 0.60 -2.2 36,762 + ABIE53_003899 0.60 -1.2 36,762 + ABIE53_003899 0.60 +2.8 36,861 + ABIE53_003899 0.71 -0.2 36,862 - ABIE53_003899 0.71 +1.0 36,862 - ABIE53_003899 0.71 -0.5 36,862 - ABIE53_003899 0.71 -1.5 36,864 - ABIE53_003899 0.71 +0.3 36,864 - ABIE53_003899 0.71 +0.5
Or see this region's nucleotide sequence