Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000808 and ABIE53_000809 are separated by 128 nucleotides ABIE53_000809 and ABIE53_000810 are separated by 175 nucleotides
ABIE53_000808: ABIE53_000808 - glycyl-tRNA synthetase alpha chain, at 876,812 to 877,837
_000808
ABIE53_000809: ABIE53_000809 - glutamate synthase domain-containing protein 2, at 877,966 to 879,576
_000809
ABIE53_000810: ABIE53_000810 - tRNA-specific 2-thiouridylase, at 879,752 to 880,897
_000810
Position (kb) 877
878
879
880 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 878.033 kb on + strand at 878.033 kb on + strand at 878.033 kb on + strand at 878.033 kb on + strand at 878.034 kb on - strand at 878.034 kb on - strand at 878.042 kb on + strand at 878.043 kb on - strand at 878.043 kb on - strand at 878.048 kb on + strand at 878.048 kb on + strand at 878.048 kb on + strand at 878.048 kb on + strand at 878.048 kb on + strand at 878.049 kb on - strand at 878.049 kb on - strand at 878.049 kb on - strand at 878.049 kb on - strand at 878.081 kb on + strand at 878.081 kb on + strand at 878.082 kb on - strand at 878.082 kb on - strand at 878.082 kb on - strand at 878.082 kb on - strand at 878.082 kb on - strand at 878.082 kb on - strand at 878.082 kb on - strand at 878.227 kb on + strand, within ABIE53_000809 at 878.416 kb on - strand, within ABIE53_000809 at 878.949 kb on - strand, within ABIE53_000809 at 878.949 kb on - strand, within ABIE53_000809 at 878.996 kb on + strand, within ABIE53_000809 at 878.997 kb on - strand, within ABIE53_000809 at 878.997 kb on - strand, within ABIE53_000809 at 878.997 kb on - strand, within ABIE53_000809 at 879.128 kb on + strand, within ABIE53_000809 at 879.128 kb on + strand, within ABIE53_000809 at 879.129 kb on - strand, within ABIE53_000809 at 879.129 kb on - strand, within ABIE53_000809 at 879.249 kb on - strand, within ABIE53_000809 at 879.284 kb on + strand, within ABIE53_000809 at 879.284 kb on + strand, within ABIE53_000809 at 879.284 kb on + strand, within ABIE53_000809 at 879.285 kb on - strand, within ABIE53_000809 at 879.285 kb on - strand, within ABIE53_000809 at 879.344 kb on + strand, within ABIE53_000809 at 879.344 kb on + strand, within ABIE53_000809 at 879.404 kb on + strand, within ABIE53_000809 at 879.405 kb on - strand, within ABIE53_000809 at 879.405 kb on - strand, within ABIE53_000809 at 879.560 kb on + strand at 879.560 kb on + strand at 879.698 kb on + strand at 879.699 kb on - strand at 879.699 kb on - strand at 879.753 kb on + strand at 879.753 kb on + strand at 879.753 kb on + strand at 879.753 kb on + strand at 879.754 kb on - strand at 879.754 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 878,033 + +0.2 878,033 + -1.2 878,033 + -0.2 878,033 + +0.7 878,034 - -0.9 878,034 - +2.5 878,042 + -3.2 878,043 - +0.1 878,043 - -4.0 878,048 + -2.1 878,048 + +1.4 878,048 + -1.0 878,048 + +1.2 878,048 + -1.5 878,049 - -2.5 878,049 - -0.3 878,049 - +1.6 878,049 - +2.1 878,081 + +1.7 878,081 + +0.3 878,082 - +0.5 878,082 - -1.3 878,082 - +0.4 878,082 - -0.6 878,082 - -0.6 878,082 - -0.2 878,082 - +1.5 878,227 + ABIE53_000809 0.16 +0.9 878,416 - ABIE53_000809 0.28 -1.0 878,949 - ABIE53_000809 0.61 -2.0 878,949 - ABIE53_000809 0.61 -2.6 878,996 + ABIE53_000809 0.64 +0.1 878,997 - ABIE53_000809 0.64 +1.2 878,997 - ABIE53_000809 0.64 -0.8 878,997 - ABIE53_000809 0.64 -0.2 879,128 + ABIE53_000809 0.72 -1.8 879,128 + ABIE53_000809 0.72 -2.6 879,129 - ABIE53_000809 0.72 +1.9 879,129 - ABIE53_000809 0.72 -0.6 879,249 - ABIE53_000809 0.80 -0.6 879,284 + ABIE53_000809 0.82 -0.1 879,284 + ABIE53_000809 0.82 +1.5 879,284 + ABIE53_000809 0.82 +0.2 879,285 - ABIE53_000809 0.82 -1.6 879,285 - ABIE53_000809 0.82 +0.6 879,344 + ABIE53_000809 0.86 -2.1 879,344 + ABIE53_000809 0.86 -0.6 879,404 + ABIE53_000809 0.89 -0.2 879,405 - ABIE53_000809 0.89 -2.8 879,405 - ABIE53_000809 0.89 +2.4 879,560 + +0.2 879,560 + +0.2 879,698 + +2.6 879,699 - +1.6 879,699 - +4.8 879,753 + +2.2 879,753 + -2.5 879,753 + +1.0 879,753 + +0.3 879,754 - -1.5 879,754 - +0.0
Or see this region's nucleotide sequence