Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000736 and ABIE53_000737 are separated by 152 nucleotides ABIE53_000737 and ABIE53_000738 overlap by 4 nucleotides ABIE53_000738 and ABIE53_000739 overlap by 14 nucleotides ABIE53_000739 and ABIE53_000740 are separated by 2 nucleotides ABIE53_000740 and ABIE53_000741 are separated by 67 nucleotides
ABIE53_000736: ABIE53_000736 - methyl-accepting chemotaxis protein-1 (serine sensor receptor), at 793,708 to 795,366
_000736
ABIE53_000737: ABIE53_000737 - cytochrome c553, at 795,519 to 796,328
_000737
ABIE53_000738: ABIE53_000738 - cytochrome c oxidase subunit 1, at 796,325 to 797,950
_000738
ABIE53_000739: ABIE53_000739 - cytochrome c oxidase subunit 2, at 797,937 to 798,515
_000739
ABIE53_000740: ABIE53_000740 - hypothetical protein, at 798,518 to 798,694
_000740
ABIE53_000741: ABIE53_000741 - mono/diheme cytochrome c family protein, at 798,762 to 800,102
_000741
Position (kb) 796
797
798 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 795.520 kb on + strand at 795.521 kb on - strand at 795.521 kb on - strand at 795.527 kb on + strand at 795.528 kb on - strand at 795.528 kb on - strand at 795.535 kb on + strand at 795.536 kb on - strand at 795.536 kb on - strand at 795.539 kb on - strand at 795.551 kb on + strand at 795.551 kb on + strand at 795.551 kb on + strand at 795.551 kb on + strand at 795.552 kb on - strand at 795.552 kb on - strand at 795.555 kb on + strand at 795.555 kb on + strand at 795.555 kb on + strand at 795.555 kb on + strand at 795.556 kb on - strand at 795.838 kb on + strand, within ABIE53_000737 at 795.838 kb on + strand, within ABIE53_000737 at 795.838 kb on + strand, within ABIE53_000737 at 795.838 kb on + strand, within ABIE53_000737 at 795.838 kb on + strand, within ABIE53_000737 at 795.839 kb on - strand, within ABIE53_000737 at 795.839 kb on - strand, within ABIE53_000737 at 795.839 kb on - strand, within ABIE53_000737 at 795.839 kb on - strand, within ABIE53_000737 at 795.841 kb on + strand, within ABIE53_000737 at 795.841 kb on + strand, within ABIE53_000737 at 795.842 kb on - strand, within ABIE53_000737 at 795.926 kb on - strand, within ABIE53_000737 at 795.943 kb on + strand, within ABIE53_000737 at 795.943 kb on + strand, within ABIE53_000737 at 795.943 kb on + strand, within ABIE53_000737 at 795.944 kb on - strand, within ABIE53_000737 at 795.944 kb on - strand, within ABIE53_000737 at 795.958 kb on + strand, within ABIE53_000737 at 796.142 kb on - strand, within ABIE53_000737 at 796.209 kb on - strand, within ABIE53_000737 at 796.242 kb on + strand, within ABIE53_000737 at 796.243 kb on - strand, within ABIE53_000737 at 796.401 kb on + strand at 796.450 kb on + strand at 796.451 kb on - strand at 796.451 kb on - strand at 796.551 kb on + strand, within ABIE53_000738 at 796.551 kb on + strand, within ABIE53_000738 at 796.551 kb on + strand, within ABIE53_000738 at 796.551 kb on + strand, within ABIE53_000738 at 796.552 kb on - strand, within ABIE53_000738 at 796.552 kb on - strand, within ABIE53_000738 at 796.552 kb on - strand, within ABIE53_000738 at 796.552 kb on - strand, within ABIE53_000738 at 796.552 kb on - strand, within ABIE53_000738 at 796.644 kb on + strand, within ABIE53_000738 at 796.644 kb on + strand, within ABIE53_000738 at 796.644 kb on + strand, within ABIE53_000738 at 796.645 kb on - strand, within ABIE53_000738 at 796.645 kb on - strand, within ABIE53_000738 at 796.645 kb on - strand, within ABIE53_000738 at 796.650 kb on + strand, within ABIE53_000738 at 796.650 kb on + strand, within ABIE53_000738 at 796.651 kb on - strand, within ABIE53_000738 at 796.654 kb on - strand, within ABIE53_000738 at 796.654 kb on - strand, within ABIE53_000738 at 796.690 kb on - strand, within ABIE53_000738 at 796.690 kb on - strand, within ABIE53_000738 at 796.690 kb on - strand, within ABIE53_000738 at 796.749 kb on - strand, within ABIE53_000738 at 796.749 kb on - strand, within ABIE53_000738 at 796.749 kb on - strand, within ABIE53_000738 at 796.800 kb on + strand, within ABIE53_000738 at 796.800 kb on + strand, within ABIE53_000738 at 796.815 kb on + strand, within ABIE53_000738 at 796.815 kb on + strand, within ABIE53_000738 at 796.816 kb on - strand, within ABIE53_000738 at 796.816 kb on - strand, within ABIE53_000738 at 796.816 kb on - strand, within ABIE53_000738 at 796.816 kb on - strand, within ABIE53_000738 at 796.899 kb on + strand, within ABIE53_000738 at 796.899 kb on + strand, within ABIE53_000738 at 796.899 kb on + strand, within ABIE53_000738 at 796.900 kb on - strand, within ABIE53_000738 at 796.900 kb on - strand, within ABIE53_000738 at 796.900 kb on - strand, within ABIE53_000738 at 796.913 kb on - strand, within ABIE53_000738 at 796.913 kb on - strand, within ABIE53_000738 at 796.913 kb on - strand, within ABIE53_000738 at 796.913 kb on - strand, within ABIE53_000738 at 797.224 kb on + strand, within ABIE53_000738 at 797.226 kb on + strand, within ABIE53_000738 at 797.226 kb on + strand, within ABIE53_000738 at 797.226 kb on + strand, within ABIE53_000738 at 797.226 kb on + strand, within ABIE53_000738 at 797.226 kb on + strand, within ABIE53_000738 at 797.226 kb on + strand, within ABIE53_000738 at 797.227 kb on - strand, within ABIE53_000738 at 797.227 kb on - strand, within ABIE53_000738 at 797.262 kb on + strand, within ABIE53_000738 at 797.262 kb on + strand, within ABIE53_000738 at 797.262 kb on + strand, within ABIE53_000738 at 797.262 kb on + strand, within ABIE53_000738 at 797.263 kb on - strand, within ABIE53_000738 at 797.263 kb on - strand, within ABIE53_000738 at 797.274 kb on + strand, within ABIE53_000738 at 797.274 kb on + strand, within ABIE53_000738 at 797.274 kb on + strand, within ABIE53_000738 at 797.275 kb on - strand, within ABIE53_000738 at 797.275 kb on - strand, within ABIE53_000738 at 797.295 kb on + strand, within ABIE53_000738 at 797.296 kb on - strand, within ABIE53_000738 at 797.296 kb on - strand, within ABIE53_000738 at 797.353 kb on + strand, within ABIE53_000738 at 797.354 kb on - strand, within ABIE53_000738 at 797.433 kb on + strand, within ABIE53_000738 at 797.434 kb on - strand, within ABIE53_000738 at 797.568 kb on + strand, within ABIE53_000738 at 797.571 kb on + strand, within ABIE53_000738 at 797.571 kb on + strand, within ABIE53_000738 at 797.571 kb on + strand, within ABIE53_000738 at 797.571 kb on + strand, within ABIE53_000738 at 797.571 kb on + strand, within ABIE53_000738 at 797.571 kb on + strand, within ABIE53_000738 at 797.572 kb on - strand, within ABIE53_000738 at 797.572 kb on - strand, within ABIE53_000738 at 797.572 kb on - strand, within ABIE53_000738 at 797.598 kb on + strand, within ABIE53_000738 at 797.598 kb on + strand, within ABIE53_000738 at 797.599 kb on - strand, within ABIE53_000738 at 797.599 kb on - strand, within ABIE53_000738 at 797.607 kb on + strand, within ABIE53_000738 at 797.608 kb on - strand, within ABIE53_000738 at 797.608 kb on - strand, within ABIE53_000738 at 797.775 kb on + strand, within ABIE53_000738 at 797.775 kb on + strand, within ABIE53_000738 at 797.775 kb on + strand, within ABIE53_000738 at 797.776 kb on - strand, within ABIE53_000738 at 797.776 kb on - strand, within ABIE53_000738 at 797.776 kb on - strand, within ABIE53_000738 at 797.811 kb on + strand at 797.814 kb on + strand at 797.814 kb on + strand at 797.814 kb on + strand at 797.814 kb on + strand at 797.815 kb on - strand at 797.815 kb on - strand at 797.815 kb on - strand at 797.939 kb on - strand at 798.110 kb on - strand, within ABIE53_000739 at 798.238 kb on + strand, within ABIE53_000739 at 798.392 kb on - strand, within ABIE53_000739 at 798.392 kb on - strand, within ABIE53_000739 at 798.414 kb on + strand, within ABIE53_000739 at 798.414 kb on + strand, within ABIE53_000739 at 798.414 kb on + strand, within ABIE53_000739 at 798.415 kb on - strand, within ABIE53_000739 at 798.415 kb on - strand, within ABIE53_000739 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.556 kb on - strand, within ABIE53_000740 at 798.556 kb on - strand, within ABIE53_000740 at 798.556 kb on - strand, within ABIE53_000740 at 798.556 kb on - strand, within ABIE53_000740 at 798.556 kb on - strand, within ABIE53_000740 at 798.590 kb on - strand, within ABIE53_000740 at 798.842 kb on + strand at 798.843 kb on - strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.845 kb on - strand at 798.845 kb on - strand at 798.845 kb on - strand at 798.845 kb on - strand at 798.845 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 795,520 + -0.2 795,521 - +1.4 795,521 - +1.7 795,527 + +2.1 795,528 - +1.5 795,528 - -2.1 795,535 + +0.4 795,536 - +3.4 795,536 - +0.1 795,539 - +3.8 795,551 + +2.0 795,551 + -0.5 795,551 + -0.0 795,551 + +0.3 795,552 - +0.9 795,552 - +0.7 795,555 + +1.3 795,555 + +1.6 795,555 + -0.2 795,555 + -0.2 795,556 - -0.5 795,838 + ABIE53_000737 0.39 -1.8 795,838 + ABIE53_000737 0.39 +2.4 795,838 + ABIE53_000737 0.39 -1.6 795,838 + ABIE53_000737 0.39 +2.0 795,838 + ABIE53_000737 0.39 +0.7 795,839 - ABIE53_000737 0.40 +0.1 795,839 - ABIE53_000737 0.40 -2.6 795,839 - ABIE53_000737 0.40 -0.4 795,839 - ABIE53_000737 0.40 -2.8 795,841 + ABIE53_000737 0.40 +3.4 795,841 + ABIE53_000737 0.40 -3.8 795,842 - ABIE53_000737 0.40 +0.8 795,926 - ABIE53_000737 0.50 +1.4 795,943 + ABIE53_000737 0.52 -1.2 795,943 + ABIE53_000737 0.52 -1.8 795,943 + ABIE53_000737 0.52 -0.6 795,944 - ABIE53_000737 0.52 -0.6 795,944 - ABIE53_000737 0.52 -1.2 795,958 + ABIE53_000737 0.54 -0.6 796,142 - ABIE53_000737 0.77 +1.1 796,209 - ABIE53_000737 0.85 -0.2 796,242 + ABIE53_000737 0.89 +3.6 796,243 - ABIE53_000737 0.89 -0.6 796,401 + +0.1 796,450 + +1.8 796,451 - -2.1 796,451 - -1.4 796,551 + ABIE53_000738 0.14 -2.3 796,551 + ABIE53_000738 0.14 -2.9 796,551 + ABIE53_000738 0.14 -0.2 796,551 + ABIE53_000738 0.14 +2.6 796,552 - ABIE53_000738 0.14 -2.9 796,552 - ABIE53_000738 0.14 +0.4 796,552 - ABIE53_000738 0.14 -0.9 796,552 - ABIE53_000738 0.14 +1.5 796,552 - ABIE53_000738 0.14 -0.6 796,644 + ABIE53_000738 0.20 +2.0 796,644 + ABIE53_000738 0.20 -0.9 796,644 + ABIE53_000738 0.20 +0.7 796,645 - ABIE53_000738 0.20 +0.9 796,645 - ABIE53_000738 0.20 -0.2 796,645 - ABIE53_000738 0.20 -2.2 796,650 + ABIE53_000738 0.20 -0.6 796,650 + ABIE53_000738 0.20 -0.9 796,651 - ABIE53_000738 0.20 -1.8 796,654 - ABIE53_000738 0.20 -0.2 796,654 - ABIE53_000738 0.20 -0.2 796,690 - ABIE53_000738 0.22 +0.2 796,690 - ABIE53_000738 0.22 -0.9 796,690 - ABIE53_000738 0.22 -2.9 796,749 - ABIE53_000738 0.26 +0.4 796,749 - ABIE53_000738 0.26 +2.5 796,749 - ABIE53_000738 0.26 -2.1 796,800 + ABIE53_000738 0.29 +1.4 796,800 + ABIE53_000738 0.29 -0.6 796,815 + ABIE53_000738 0.30 -1.2 796,815 + ABIE53_000738 0.30 -1.6 796,816 - ABIE53_000738 0.30 +0.5 796,816 - ABIE53_000738 0.30 -0.6 796,816 - ABIE53_000738 0.30 -1.2 796,816 - ABIE53_000738 0.30 -0.2 796,899 + ABIE53_000738 0.35 -2.7 796,899 + ABIE53_000738 0.35 +0.7 796,899 + ABIE53_000738 0.35 -1.8 796,900 - ABIE53_000738 0.35 +1.8 796,900 - ABIE53_000738 0.35 +2.0 796,900 - ABIE53_000738 0.35 -1.8 796,913 - ABIE53_000738 0.36 -1.2 796,913 - ABIE53_000738 0.36 +1.7 796,913 - ABIE53_000738 0.36 +1.4 796,913 - ABIE53_000738 0.36 +0.8 797,224 + ABIE53_000738 0.55 -0.9 797,226 + ABIE53_000738 0.55 +1.9 797,226 + ABIE53_000738 0.55 -2.1 797,226 + ABIE53_000738 0.55 +1.4 797,226 + ABIE53_000738 0.55 -1.8 797,226 + ABIE53_000738 0.55 -0.2 797,226 + ABIE53_000738 0.55 +1.3 797,227 - ABIE53_000738 0.55 +2.6 797,227 - ABIE53_000738 0.55 +0.4 797,262 + ABIE53_000738 0.58 +1.0 797,262 + ABIE53_000738 0.58 -1.8 797,262 + ABIE53_000738 0.58 -1.6 797,262 + ABIE53_000738 0.58 -0.5 797,263 - ABIE53_000738 0.58 -1.0 797,263 - ABIE53_000738 0.58 -0.9 797,274 + ABIE53_000738 0.58 +2.7 797,274 + ABIE53_000738 0.58 +1.3 797,274 + ABIE53_000738 0.58 -1.9 797,275 - ABIE53_000738 0.58 +1.9 797,275 - ABIE53_000738 0.58 +1.4 797,295 + ABIE53_000738 0.60 +0.4 797,296 - ABIE53_000738 0.60 +0.5 797,296 - ABIE53_000738 0.60 -2.8 797,353 + ABIE53_000738 0.63 -0.6 797,354 - ABIE53_000738 0.63 -0.3 797,433 + ABIE53_000738 0.68 +0.9 797,434 - ABIE53_000738 0.68 -1.4 797,568 + ABIE53_000738 0.76 +0.9 797,571 + ABIE53_000738 0.77 +4.0 797,571 + ABIE53_000738 0.77 +1.4 797,571 + ABIE53_000738 0.77 -2.1 797,571 + ABIE53_000738 0.77 -2.7 797,571 + ABIE53_000738 0.77 -0.9 797,571 + ABIE53_000738 0.77 -0.6 797,572 - ABIE53_000738 0.77 +0.1 797,572 - ABIE53_000738 0.77 +0.4 797,572 - ABIE53_000738 0.77 +0.9 797,598 + ABIE53_000738 0.78 -0.2 797,598 + ABIE53_000738 0.78 +0.7 797,599 - ABIE53_000738 0.78 +0.2 797,599 - ABIE53_000738 0.78 -0.6 797,607 + ABIE53_000738 0.79 -1.3 797,608 - ABIE53_000738 0.79 -0.9 797,608 - ABIE53_000738 0.79 +2.1 797,775 + ABIE53_000738 0.89 +0.5 797,775 + ABIE53_000738 0.89 +1.8 797,775 + ABIE53_000738 0.89 +0.4 797,776 - ABIE53_000738 0.89 +1.4 797,776 - ABIE53_000738 0.89 -0.6 797,776 - ABIE53_000738 0.89 +1.3 797,811 + -1.2 797,814 + +0.8 797,814 + +0.9 797,814 + -0.6 797,814 + -1.9 797,815 - +1.1 797,815 - -0.2 797,815 - -0.9 797,939 - -0.2 798,110 - ABIE53_000739 0.30 +0.4 798,238 + ABIE53_000739 0.52 +2.0 798,392 - ABIE53_000739 0.79 -0.3 798,392 - ABIE53_000739 0.79 +2.5 798,414 + ABIE53_000739 0.82 -0.6 798,414 + ABIE53_000739 0.82 +2.9 798,414 + ABIE53_000739 0.82 +0.3 798,415 - ABIE53_000739 0.83 +0.1 798,415 - ABIE53_000739 0.83 -1.2 798,555 + ABIE53_000740 0.21 -0.2 798,555 + ABIE53_000740 0.21 -1.6 798,555 + ABIE53_000740 0.21 -0.5 798,555 + ABIE53_000740 0.21 -1.3 798,555 + ABIE53_000740 0.21 +1.6 798,555 + ABIE53_000740 0.21 +0.5 798,555 + ABIE53_000740 0.21 +2.9 798,556 - ABIE53_000740 0.21 -0.2 798,556 - ABIE53_000740 0.21 +0.7 798,556 - ABIE53_000740 0.21 -2.9 798,556 - ABIE53_000740 0.21 +0.5 798,556 - ABIE53_000740 0.21 -1.3 798,590 - ABIE53_000740 0.41 +0.6 798,842 + +0.4 798,843 - -0.2 798,844 + +2.9 798,844 + +0.5 798,844 + -0.2 798,844 + +1.1 798,844 + +0.1 798,844 + -0.2 798,844 + -0.9 798,845 - +0.8 798,845 - -2.7 798,845 - -2.6 798,845 - -1.0 798,845 - +0.8
Or see this region's nucleotide sequence