Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000694 and ABIE53_000695 are separated by 360 nucleotides ABIE53_000695 and ABIE53_000696 are separated by 39 nucleotides ABIE53_000696 and ABIE53_000697 are separated by 2 nucleotides
ABIE53_000694: ABIE53_000694 - RNA polymerase sigma-32 factor, at 750,025 to 750,960
_000694
ABIE53_000695: ABIE53_000695 - lipid A 3-O-deacylase, at 751,321 to 751,884
_000695
ABIE53_000696: ABIE53_000696 - ketosteroid isomerase-like protein, at 751,924 to 752,307
_000696
ABIE53_000697: ABIE53_000697 - anthranilate phosphoribosyltransferase, at 752,310 to 753,281
_000697
Position (kb) 751
752 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 751.023 kb on + strand at 751.024 kb on - strand at 751.024 kb on - strand at 751.024 kb on - strand at 751.046 kb on + strand at 751.049 kb on + strand at 751.049 kb on + strand at 751.049 kb on + strand at 751.049 kb on + strand at 751.049 kb on + strand at 751.049 kb on + strand at 751.050 kb on - strand at 751.053 kb on + strand at 751.053 kb on + strand at 751.053 kb on + strand at 751.053 kb on + strand at 751.053 kb on + strand at 751.053 kb on + strand at 751.054 kb on - strand at 751.054 kb on - strand at 751.054 kb on - strand at 751.054 kb on - strand at 751.054 kb on - strand at 751.054 kb on - strand at 751.063 kb on - strand at 751.109 kb on + strand at 751.148 kb on + strand at 751.148 kb on + strand at 751.156 kb on - strand at 751.215 kb on + strand at 751.215 kb on + strand at 751.215 kb on + strand at 751.216 kb on - strand at 751.216 kb on - strand at 751.216 kb on - strand at 751.238 kb on + strand at 751.239 kb on - strand at 751.269 kb on - strand at 751.273 kb on + strand at 751.273 kb on + strand at 751.273 kb on + strand at 751.273 kb on + strand at 751.273 kb on + strand at 751.274 kb on - strand at 751.286 kb on + strand at 751.286 kb on + strand at 751.358 kb on + strand at 751.563 kb on + strand, within ABIE53_000695 at 751.563 kb on + strand, within ABIE53_000695 at 751.563 kb on + strand, within ABIE53_000695 at 751.563 kb on + strand, within ABIE53_000695 at 751.564 kb on - strand, within ABIE53_000695 at 751.614 kb on + strand, within ABIE53_000695 at 751.614 kb on + strand, within ABIE53_000695 at 751.615 kb on - strand, within ABIE53_000695 at 751.615 kb on - strand, within ABIE53_000695 at 751.615 kb on - strand, within ABIE53_000695 at 751.615 kb on - strand, within ABIE53_000695 at 751.783 kb on + strand, within ABIE53_000695 at 751.784 kb on - strand, within ABIE53_000695 at 751.845 kb on + strand at 751.845 kb on + strand at 751.846 kb on - strand at 751.847 kb on + strand at 751.848 kb on - strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.875 kb on + strand at 751.875 kb on + strand at 751.875 kb on + strand at 751.875 kb on + strand at 751.875 kb on + strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.908 kb on + strand at 751.908 kb on + strand at 751.908 kb on + strand at 751.909 kb on - strand at 751.909 kb on - strand at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.088 kb on + strand, within ABIE53_000696 at 752.088 kb on + strand, within ABIE53_000696 at 752.230 kb on + strand, within ABIE53_000696 at 752.230 kb on + strand, within ABIE53_000696 at 752.230 kb on + strand, within ABIE53_000696 at 752.230 kb on + strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.244 kb on + strand, within ABIE53_000696 at 752.244 kb on + strand, within ABIE53_000696 at 752.244 kb on + strand, within ABIE53_000696 at 752.245 kb on - strand, within ABIE53_000696 at 752.311 kb on + strand at 752.311 kb on + strand at 752.311 kb on + strand at 752.311 kb on + strand at 752.311 kb on + strand at 752.312 kb on - strand at 752.312 kb on - strand at 752.312 kb on - strand at 752.440 kb on - strand, within ABIE53_000697 at 752.440 kb on - strand, within ABIE53_000697 at 752.613 kb on + strand, within ABIE53_000697 at 752.613 kb on + strand, within ABIE53_000697 at 752.613 kb on + strand, within ABIE53_000697 at 752.613 kb on + strand, within ABIE53_000697 at 752.614 kb on - strand, within ABIE53_000697 at 752.635 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.823 kb on - strand, within ABIE53_000697
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 751,023 + -0.2 751,024 - +1.8 751,024 - -0.6 751,024 - +0.4 751,046 + -1.2 751,049 + -0.6 751,049 + +0.8 751,049 + +0.1 751,049 + +3.2 751,049 + -2.3 751,049 + -2.1 751,050 - -1.6 751,053 + +2.0 751,053 + +2.6 751,053 + +1.6 751,053 + -3.0 751,053 + -1.9 751,053 + -2.1 751,054 - -1.4 751,054 - -1.2 751,054 - +0.1 751,054 - +1.9 751,054 - -0.2 751,054 - +2.4 751,063 - +1.3 751,109 + +0.1 751,148 + -0.5 751,148 + +1.0 751,156 - +0.6 751,215 + -0.5 751,215 + +0.8 751,215 + -0.3 751,216 - -0.2 751,216 - -0.9 751,216 - -0.0 751,238 + -0.6 751,239 - +1.4 751,269 - +1.4 751,273 + -0.6 751,273 + +3.2 751,273 + -2.1 751,273 + +0.6 751,273 + -0.6 751,274 - -0.2 751,286 + +1.6 751,286 + +2.1 751,358 + -0.3 751,563 + ABIE53_000695 0.43 +0.9 751,563 + ABIE53_000695 0.43 +0.2 751,563 + ABIE53_000695 0.43 +1.9 751,563 + ABIE53_000695 0.43 +2.3 751,564 - ABIE53_000695 0.43 +4.2 751,614 + ABIE53_000695 0.52 +0.4 751,614 + ABIE53_000695 0.52 -0.3 751,615 - ABIE53_000695 0.52 -0.4 751,615 - ABIE53_000695 0.52 -0.2 751,615 - ABIE53_000695 0.52 -2.4 751,615 - ABIE53_000695 0.52 +2.5 751,783 + ABIE53_000695 0.82 -0.9 751,784 - ABIE53_000695 0.82 +2.2 751,845 + +1.4 751,845 + +1.1 751,846 - -0.6 751,847 + +0.3 751,848 - -0.6 751,862 + -1.8 751,862 + +1.4 751,862 + -1.6 751,862 + -0.6 751,862 + -1.6 751,862 + -1.8 751,862 + +2.3 751,862 + +2.0 751,862 + +1.2 751,862 + +1.4 751,862 + +1.0 751,862 + +1.5 751,863 - -2.1 751,863 - -0.6 751,863 - +1.6 751,863 - +2.7 751,863 - +0.3 751,863 - -0.8 751,863 - -1.4 751,863 - -0.2 751,863 - -0.6 751,863 - +1.6 751,863 - +0.5 751,863 - +1.9 751,863 - +1.7 751,863 - +0.2 751,863 - +0.5 751,863 - +1.6 751,863 - +2.4 751,863 - +0.9 751,863 - +1.4 751,863 - +0.4 751,864 + +0.1 751,864 + -1.4 751,864 + -1.8 751,864 + -2.1 751,864 + -0.0 751,864 + +0.4 751,864 + +1.1 751,864 + -1.4 751,864 + +1.4 751,864 + -0.4 751,864 + -1.6 751,864 + -1.7 751,864 + -0.2 751,865 - -0.2 751,865 - +1.0 751,865 - +0.2 751,865 - -1.8 751,865 - +2.0 751,865 - +2.0 751,865 - +1.1 751,865 - +1.6 751,865 - -1.4 751,865 - -1.6 751,865 - +4.7 751,873 + +2.8 751,873 + -0.7 751,873 + +0.9 751,873 + -2.2 751,873 + +1.4 751,873 + -1.6 751,873 + +1.3 751,873 + -0.3 751,873 + -0.3 751,874 - -0.9 751,874 - +1.9 751,874 - -0.5 751,874 - +1.2 751,874 - -0.2 751,874 - +0.3 751,874 - +0.7 751,874 - -0.9 751,874 - +0.2 751,874 - +1.7 751,874 - +0.4 751,874 - -0.0 751,875 + +0.6 751,875 + +0.6 751,875 + -1.2 751,875 + +0.4 751,875 + -1.4 751,876 - +2.0 751,876 - +1.5 751,876 - +0.9 751,876 - -0.2 751,876 - -3.8 751,876 - -0.2 751,876 - +2.4 751,876 - +1.4 751,876 - -0.6 751,876 - +0.0 751,876 - +1.8 751,908 + +2.8 751,908 + -0.6 751,908 + +2.4 751,909 - +2.0 751,909 - +1.5 752,035 + ABIE53_000696 0.29 +1.2 752,035 + ABIE53_000696 0.29 +1.6 752,035 + ABIE53_000696 0.29 +2.8 752,035 + ABIE53_000696 0.29 -1.6 752,035 + ABIE53_000696 0.29 -2.1 752,035 + ABIE53_000696 0.29 +0.7 752,035 + ABIE53_000696 0.29 -2.2 752,035 + ABIE53_000696 0.29 -0.6 752,036 - ABIE53_000696 0.29 +0.4 752,036 - ABIE53_000696 0.29 -0.2 752,036 - ABIE53_000696 0.29 -1.4 752,036 - ABIE53_000696 0.29 +0.5 752,036 - ABIE53_000696 0.29 +0.8 752,036 - ABIE53_000696 0.29 +1.0 752,036 - ABIE53_000696 0.29 -0.9 752,036 - ABIE53_000696 0.29 +2.6 752,036 - ABIE53_000696 0.29 -0.9 752,036 - ABIE53_000696 0.29 +2.0 752,036 - ABIE53_000696 0.29 +2.3 752,036 - ABIE53_000696 0.29 +1.3 752,036 - ABIE53_000696 0.29 +2.0 752,036 - ABIE53_000696 0.29 +1.9 752,036 - ABIE53_000696 0.29 +1.5 752,036 - ABIE53_000696 0.29 -2.1 752,036 - ABIE53_000696 0.29 +0.6 752,036 - ABIE53_000696 0.29 +1.5 752,088 + ABIE53_000696 0.43 -1.2 752,088 + ABIE53_000696 0.43 +0.9 752,230 + ABIE53_000696 0.80 +1.0 752,230 + ABIE53_000696 0.80 +0.5 752,230 + ABIE53_000696 0.80 +1.6 752,230 + ABIE53_000696 0.80 +0.7 752,231 - ABIE53_000696 0.80 -0.2 752,231 - ABIE53_000696 0.80 +0.5 752,231 - ABIE53_000696 0.80 -0.2 752,231 - ABIE53_000696 0.80 +1.7 752,231 - ABIE53_000696 0.80 +1.4 752,231 - ABIE53_000696 0.80 +0.7 752,231 - ABIE53_000696 0.80 +0.9 752,231 - ABIE53_000696 0.80 +2.5 752,231 - ABIE53_000696 0.80 +1.5 752,244 + ABIE53_000696 0.83 +2.1 752,244 + ABIE53_000696 0.83 +1.7 752,244 + ABIE53_000696 0.83 +0.4 752,245 - ABIE53_000696 0.84 +0.1 752,311 + -0.6 752,311 + +1.9 752,311 + -0.6 752,311 + -1.6 752,311 + +1.0 752,312 - -0.6 752,312 - +1.1 752,312 - -0.2 752,440 - ABIE53_000697 0.13 -1.2 752,440 - ABIE53_000697 0.13 +0.8 752,613 + ABIE53_000697 0.31 -2.4 752,613 + ABIE53_000697 0.31 -0.5 752,613 + ABIE53_000697 0.31 +0.4 752,613 + ABIE53_000697 0.31 -1.8 752,614 - ABIE53_000697 0.31 -1.9 752,635 + ABIE53_000697 0.33 +0.4 752,650 + ABIE53_000697 0.35 -3.7 752,650 + ABIE53_000697 0.35 -1.2 752,650 + ABIE53_000697 0.35 -3.9 752,650 + ABIE53_000697 0.35 +3.5 752,650 + ABIE53_000697 0.35 -0.8 752,650 + ABIE53_000697 0.35 +2.3 752,650 + ABIE53_000697 0.35 -0.6 752,650 + ABIE53_000697 0.35 -1.4 752,650 + ABIE53_000697 0.35 -0.1 752,650 + ABIE53_000697 0.35 +0.5 752,651 - ABIE53_000697 0.35 +0.4 752,651 - ABIE53_000697 0.35 -0.6 752,651 - ABIE53_000697 0.35 +1.4 752,651 - ABIE53_000697 0.35 +3.3 752,651 - ABIE53_000697 0.35 +0.5 752,651 - ABIE53_000697 0.35 +3.3 752,651 - ABIE53_000697 0.35 -1.2 752,651 - ABIE53_000697 0.35 -0.8 752,651 - ABIE53_000697 0.35 -2.2 752,651 - ABIE53_000697 0.35 -1.6 752,651 - ABIE53_000697 0.35 -2.5 752,651 - ABIE53_000697 0.35 +1.9 752,651 - ABIE53_000697 0.35 +1.0 752,651 - ABIE53_000697 0.35 -1.4 752,651 - ABIE53_000697 0.35 -0.9 752,823 - ABIE53_000697 0.53 -1.2
Or see this region's nucleotide sequence