Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0066

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0065 and DVU0066 are separated by 214 nucleotidesDVU0066 and DVU0067 are separated by 170 nucleotidesDVU0067 and DVU0068 are separated by 376 nucleotides DVU0065: DVU0065 - hypothetical protein (TIGR), at 77,110 to 77,907 DVU0065 DVU0066: DVU0066 - cytidine/deoxycytidylate deaminase domain protein (TIGR), at 78,122 to 78,691 DVU0066 DVU0067: DVU0067 - hypothetical protein (TIGR), at 78,862 to 79,170 DVU0067 DVU0068: DVU0068 - conserved hypothetical protein (TIGR), at 79,547 to 81,082 DVU0068 Position (kb) 78 79Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 77.143 kb on - strandat 77.143 kb on - strandat 77.223 kb on - strand, within DVU0065at 77.229 kb on + strand, within DVU0065at 77.255 kb on + strand, within DVU0065at 77.257 kb on + strand, within DVU0065at 77.262 kb on + strand, within DVU0065at 77.265 kb on - strand, within DVU0065at 77.265 kb on - strand, within DVU0065at 77.265 kb on - strand, within DVU0065at 77.310 kb on - strand, within DVU0065at 77.383 kb on - strand, within DVU0065at 77.387 kb on + strand, within DVU0065at 77.393 kb on - strand, within DVU0065at 77.395 kb on - strand, within DVU0065at 77.405 kb on - strand, within DVU0065at 77.552 kb on + strand, within DVU0065at 77.565 kb on - strand, within DVU0065at 77.566 kb on + strand, within DVU0065at 77.568 kb on - strand, within DVU0065at 77.616 kb on + strand, within DVU0065at 77.626 kb on + strand, within DVU0065at 77.629 kb on - strand, within DVU0065at 77.639 kb on + strand, within DVU0065at 77.653 kb on - strand, within DVU0065at 77.664 kb on + strand, within DVU0065at 77.665 kb on - strand, within DVU0065at 77.728 kb on + strand, within DVU0065at 77.754 kb on + strand, within DVU0065at 77.797 kb on + strand, within DVU0065at 77.815 kb on + strand, within DVU0065at 77.823 kb on - strand, within DVU0065at 77.844 kb on - strandat 77.851 kb on - strandat 77.918 kb on - strandat 77.936 kb on - strandat 77.961 kb on + strandat 77.969 kb on - strandat 77.976 kb on + strandat 77.984 kb on - strandat 78.000 kb on + strandat 78.033 kb on - strandat 78.116 kb on - strandat 78.116 kb on - strandat 78.223 kb on - strand, within DVU0066at 78.266 kb on + strand, within DVU0066at 78.370 kb on + strand, within DVU0066at 78.407 kb on + strand, within DVU0066at 78.415 kb on - strand, within DVU0066at 78.442 kb on - strand, within DVU0066at 78.442 kb on - strand, within DVU0066at 78.442 kb on - strand, within DVU0066at 78.470 kb on + strand, within DVU0066at 78.470 kb on + strand, within DVU0066at 78.470 kb on + strand, within DVU0066at 78.509 kb on + strand, within DVU0066at 78.509 kb on + strand, within DVU0066at 78.533 kb on + strand, within DVU0066at 78.573 kb on - strand, within DVU0066at 78.575 kb on + strand, within DVU0066at 78.646 kb on + strandat 78.651 kb on + strandat 78.654 kb on - strandat 78.886 kb on + strandat 78.894 kb on - strand, within DVU0067at 78.894 kb on - strand, within DVU0067at 78.964 kb on + strand, within DVU0067at 78.980 kb on - strand, within DVU0067at 78.987 kb on - strand, within DVU0067at 79.009 kb on - strand, within DVU0067at 79.100 kb on - strand, within DVU0067at 79.117 kb on - strand, within DVU0067at 79.134 kb on - strand, within DVU0067at 79.211 kb on + strandat 79.288 kb on + strandat 79.353 kb on + strandat 79.360 kb on - strandat 79.394 kb on - strandat 79.533 kb on - strandat 79.591 kb on - strandat 79.606 kb on - strandat 79.615 kb on + strandat 79.615 kb on + strandat 79.615 kb on + strandat 79.615 kb on + strandat 79.623 kb on - strandat 79.623 kb on - strandat 79.677 kb on + strandat 79.685 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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77,143 - +1.3
77,143 - +2.0
77,223 - DVU0065 0.14 -0.7
77,229 + DVU0065 0.15 -2.4
77,255 + DVU0065 0.18 +0.4
77,257 + DVU0065 0.18 -1.3
77,262 + DVU0065 0.19 -1.2
77,265 - DVU0065 0.19 +1.6
77,265 - DVU0065 0.19 +0.3
77,265 - DVU0065 0.19 -1.9
77,310 - DVU0065 0.25 -0.2
77,383 - DVU0065 0.34 -0.1
77,387 + DVU0065 0.35 +2.9
77,393 - DVU0065 0.35 -0.2
77,395 - DVU0065 0.36 -1.2
77,405 - DVU0065 0.37 -0.0
77,552 + DVU0065 0.55 -0.7
77,565 - DVU0065 0.57 -1.2
77,566 + DVU0065 0.57 -1.8
77,568 - DVU0065 0.57 +0.7
77,616 + DVU0065 0.63 +2.0
77,626 + DVU0065 0.65 +0.8
77,629 - DVU0065 0.65 -1.4
77,639 + DVU0065 0.66 -1.1
77,653 - DVU0065 0.68 -0.5
77,664 + DVU0065 0.69 -1.9
77,665 - DVU0065 0.70 -0.5
77,728 + DVU0065 0.77 -0.3
77,754 + DVU0065 0.81 +0.9
77,797 + DVU0065 0.86 +1.6
77,815 + DVU0065 0.88 +0.1
77,823 - DVU0065 0.89 -1.3
77,844 - +0.0
77,851 - +0.8
77,918 - +0.1
77,936 - -0.4
77,961 + -1.9
77,969 - -2.4
77,976 + -1.6
77,984 - -0.2
78,000 + -0.6
78,033 - -0.6
78,116 - -1.4
78,116 - +0.5
78,223 - DVU0066 0.18 -0.7
78,266 + DVU0066 0.25 -0.9
78,370 + DVU0066 0.44 +2.0
78,407 + DVU0066 0.50 +0.4
78,415 - DVU0066 0.51 +0.4
78,442 - DVU0066 0.56 +0.1
78,442 - DVU0066 0.56 -0.0
78,442 - DVU0066 0.56 +0.9
78,470 + DVU0066 0.61 +1.3
78,470 + DVU0066 0.61 +3.4
78,470 + DVU0066 0.61 -1.2
78,509 + DVU0066 0.68 -0.2
78,509 + DVU0066 0.68 -1.7
78,533 + DVU0066 0.72 -1.0
78,573 - DVU0066 0.79 -0.6
78,575 + DVU0066 0.79 -3.2
78,646 + +0.1
78,651 + +1.9
78,654 - -3.9
78,886 + -2.4
78,894 - DVU0067 0.10 -0.3
78,894 - DVU0067 0.10 +0.3
78,964 + DVU0067 0.33 -0.4
78,980 - DVU0067 0.38 +0.3
78,987 - DVU0067 0.40 +1.0
79,009 - DVU0067 0.48 -2.0
79,100 - DVU0067 0.77 +0.8
79,117 - DVU0067 0.83 +0.6
79,134 - DVU0067 0.88 +0.1
79,211 + -0.8
79,288 + +2.6
79,353 + -1.4
79,360 - -0.3
79,394 - -0.2
79,533 - +1.3
79,591 - +2.0
79,606 - -2.9
79,615 + -0.9
79,615 + +0.1
79,615 + +0.5
79,615 + +3.7
79,623 - -1.0
79,623 - +1.6
79,677 + +0.6
79,685 - +0.5

Or see this region's nucleotide sequence