Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3264

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfrdB and DVU3264 are separated by 385 nucleotidesDVU3264 and DVU3265 overlap by 1 nucleotidesDVU3265 and DVU3266 are separated by 263 nucleotides DVU3263: frdB - fumarate reductase, iron-sulfur protein (TIGR), at 3,438,819 to 3,439,562 frdB DVU3264: DVU3264 - tartrate dehydratase alpha subunit, putative (TIGR), at 3,439,948 to 3,440,787 DVU3264 DVU3265: DVU3265 - tartrate dehydratase beta subunit, putative (TIGR), at 3,440,787 to 3,441,338 DVU3265 DVU3266: DVU3266 - conserved hypothetical protein (TIGR), at 3,441,602 to 3,442,393 DVU3266 Position (kb) 3439 3440 3441Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3438.954 kb on + strand, within frdBat 3438.962 kb on - strand, within frdBat 3438.962 kb on - strand, within frdBat 3439.038 kb on + strand, within frdBat 3439.078 kb on + strand, within frdBat 3439.095 kb on + strand, within frdBat 3439.145 kb on + strand, within frdBat 3439.161 kb on - strand, within frdBat 3439.179 kb on + strand, within frdBat 3439.194 kb on - strand, within frdBat 3439.328 kb on - strand, within frdBat 3439.388 kb on + strand, within frdBat 3439.396 kb on - strand, within frdBat 3439.414 kb on + strand, within frdBat 3439.446 kb on - strand, within frdBat 3439.567 kb on + strandat 3439.606 kb on + strandat 3439.714 kb on - strandat 3439.718 kb on + strandat 3439.767 kb on - strandat 3439.768 kb on - strandat 3439.813 kb on - strandat 3439.862 kb on + strandat 3439.881 kb on + strandat 3439.992 kb on + strandat 3439.992 kb on + strandat 3439.992 kb on + strandat 3439.997 kb on + strandat 3440.021 kb on + strandat 3440.031 kb on + strandat 3440.106 kb on - strand, within DVU3264at 3440.108 kb on - strand, within DVU3264at 3440.136 kb on + strand, within DVU3264at 3440.252 kb on - strand, within DVU3264at 3440.420 kb on + strand, within DVU3264at 3440.428 kb on - strand, within DVU3264at 3440.439 kb on - strand, within DVU3264at 3440.439 kb on - strand, within DVU3264at 3440.482 kb on - strand, within DVU3264at 3440.548 kb on - strand, within DVU3264at 3440.567 kb on - strand, within DVU3264at 3440.648 kb on + strand, within DVU3264at 3440.801 kb on - strandat 3440.820 kb on - strandat 3440.840 kb on + strandat 3440.856 kb on + strand, within DVU3265at 3440.873 kb on + strand, within DVU3265at 3440.881 kb on - strand, within DVU3265at 3440.881 kb on - strand, within DVU3265at 3440.916 kb on + strand, within DVU3265at 3440.949 kb on - strand, within DVU3265at 3440.978 kb on + strand, within DVU3265at 3440.983 kb on + strand, within DVU3265at 3441.054 kb on - strand, within DVU3265at 3441.116 kb on + strand, within DVU3265at 3441.229 kb on + strand, within DVU3265at 3441.241 kb on + strand, within DVU3265at 3441.255 kb on + strand, within DVU3265at 3441.263 kb on - strand, within DVU3265at 3441.263 kb on - strand, within DVU3265at 3441.263 kb on - strand, within DVU3265at 3441.320 kb on - strandat 3441.369 kb on + strandat 3441.369 kb on + strandat 3441.382 kb on - strandat 3441.508 kb on + strandat 3441.590 kb on - strandat 3441.607 kb on + strandat 3441.625 kb on - strandat 3441.677 kb on - strandat 3441.712 kb on - strand, within DVU3266at 3441.757 kb on - strand, within DVU3266

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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3,438,954 + frdB DVU3263 0.18 -1.9
3,438,962 - frdB DVU3263 0.19 +2.7
3,438,962 - frdB DVU3263 0.19 -0.4
3,439,038 + frdB DVU3263 0.29 -2.2
3,439,078 + frdB DVU3263 0.35 -1.2
3,439,095 + frdB DVU3263 0.37 -0.7
3,439,145 + frdB DVU3263 0.44 +2.8
3,439,161 - frdB DVU3263 0.46 +0.3
3,439,179 + frdB DVU3263 0.48 +0.5
3,439,194 - frdB DVU3263 0.50 -0.6
3,439,328 - frdB DVU3263 0.68 +0.1
3,439,388 + frdB DVU3263 0.76 +0.3
3,439,396 - frdB DVU3263 0.78 -0.6
3,439,414 + frdB DVU3263 0.80 -0.6
3,439,446 - frdB DVU3263 0.84 -0.6
3,439,567 + +0.8
3,439,606 + -1.9
3,439,714 - +3.1
3,439,718 + -0.8
3,439,767 - +0.0
3,439,768 - -0.3
3,439,813 - -0.9
3,439,862 + +0.1
3,439,881 + -1.4
3,439,992 + +0.7
3,439,992 + -1.6
3,439,992 + -1.5
3,439,997 + +0.4
3,440,021 + +2.1
3,440,031 + -0.2
3,440,106 - DVU3264 0.19 -1.9
3,440,108 - DVU3264 0.19 -1.1
3,440,136 + DVU3264 0.22 -1.7
3,440,252 - DVU3264 0.36 -1.1
3,440,420 + DVU3264 0.56 -2.6
3,440,428 - DVU3264 0.57 -2.5
3,440,439 - DVU3264 0.58 -1.0
3,440,439 - DVU3264 0.58 -0.3
3,440,482 - DVU3264 0.64 -1.1
3,440,548 - DVU3264 0.71 -2.0
3,440,567 - DVU3264 0.74 +2.7
3,440,648 + DVU3264 0.83 -1.0
3,440,801 - -0.7
3,440,820 - -0.3
3,440,840 + -2.5
3,440,856 + DVU3265 0.12 -2.2
3,440,873 + DVU3265 0.16 +0.1
3,440,881 - DVU3265 0.17 +1.7
3,440,881 - DVU3265 0.17 -1.5
3,440,916 + DVU3265 0.23 -0.7
3,440,949 - DVU3265 0.29 +0.2
3,440,978 + DVU3265 0.35 -0.1
3,440,983 + DVU3265 0.36 +1.7
3,441,054 - DVU3265 0.48 -1.4
3,441,116 + DVU3265 0.60 -1.4
3,441,229 + DVU3265 0.80 -2.3
3,441,241 + DVU3265 0.82 -2.8
3,441,255 + DVU3265 0.85 -1.1
3,441,263 - DVU3265 0.86 +0.7
3,441,263 - DVU3265 0.86 -0.2
3,441,263 - DVU3265 0.86 -0.1
3,441,320 - -0.5
3,441,369 + -0.3
3,441,369 + +0.2
3,441,382 - -3.7
3,441,508 + +2.6
3,441,590 - -0.4
3,441,607 + -1.0
3,441,625 - +1.8
3,441,677 - +1.6
3,441,712 - DVU3266 0.14 -0.4
3,441,757 - DVU3266 0.20 +1.1

Or see this region's nucleotide sequence