Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3154

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3152 and DVU3153 are separated by 435 nucleotidesDVU3153 and DVU3154 overlap by 4 nucleotidesDVU3154 and dcrH are separated by 475 nucleotides DVU3152: DVU3152 - sensory box histidine kinase (TIGR), at 3,304,918 to 3,306,579 DVU3152 DVU3153: DVU3153 - hypothetical protein (TIGR), at 3,307,015 to 3,307,134 DVU3153 DVU3154: DVU3154 - HAM1 family protein (TIGR), at 3,307,131 to 3,307,754 DVU3154 DVU3155: dcrH - methyl-accepting chemotaxis protein DcrH (TIGR), at 3,308,230 to 3,311,121 dcrH Position (kb) 3307 3308Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3306.135 kb on - strand, within DVU3152at 3306.158 kb on + strand, within DVU3152at 3306.158 kb on + strand, within DVU3152at 3306.163 kb on + strand, within DVU3152at 3306.173 kb on + strand, within DVU3152at 3306.175 kb on + strand, within DVU3152at 3306.175 kb on + strand, within DVU3152at 3306.229 kb on - strand, within DVU3152at 3306.229 kb on - strand, within DVU3152at 3306.242 kb on - strand, within DVU3152at 3306.259 kb on + strand, within DVU3152at 3306.267 kb on - strand, within DVU3152at 3306.370 kb on - strand, within DVU3152at 3306.428 kb on + strandat 3306.428 kb on + strandat 3306.428 kb on + strandat 3306.436 kb on - strandat 3306.480 kb on - strandat 3306.573 kb on + strandat 3306.591 kb on + strandat 3306.599 kb on - strandat 3306.599 kb on - strandat 3306.634 kb on + strandat 3306.634 kb on - strandat 3306.659 kb on - strandat 3306.693 kb on + strandat 3306.693 kb on + strandat 3306.701 kb on - strandat 3306.709 kb on + strandat 3306.738 kb on + strandat 3306.746 kb on - strandat 3306.754 kb on + strandat 3306.768 kb on - strandat 3306.799 kb on + strandat 3306.799 kb on + strandat 3306.799 kb on + strandat 3306.799 kb on + strandat 3306.799 kb on + strandat 3306.855 kb on - strandat 3306.874 kb on + strandat 3306.882 kb on + strandat 3306.890 kb on - strandat 3306.927 kb on + strandat 3306.932 kb on + strandat 3306.940 kb on + strandat 3306.948 kb on - strandat 3306.950 kb on + strandat 3306.963 kb on - strandat 3307.020 kb on - strandat 3307.026 kb on + strandat 3307.053 kb on - strand, within DVU3153at 3307.058 kb on - strand, within DVU3153at 3307.083 kb on + strand, within DVU3153at 3307.096 kb on + strand, within DVU3153at 3307.124 kb on - strandat 3307.124 kb on - strandat 3307.127 kb on + strandat 3307.135 kb on - strandat 3307.758 kb on - strandat 3307.758 kb on - strandat 3307.785 kb on - strandat 3307.854 kb on - strandat 3307.887 kb on - strandat 3307.998 kb on + strandat 3308.018 kb on + strandat 3308.045 kb on - strandat 3308.045 kb on - strandat 3308.045 kb on - strandat 3308.045 kb on - strandat 3308.057 kb on + strandat 3308.071 kb on - strandat 3308.106 kb on + strandat 3308.117 kb on + strandat 3308.117 kb on + strandat 3308.117 kb on + strandat 3308.117 kb on + strandat 3308.125 kb on - strandat 3308.125 kb on - strandat 3308.125 kb on - strandat 3308.125 kb on - strandat 3308.130 kb on + strandat 3308.179 kb on + strandat 3308.192 kb on - strandat 3308.211 kb on - strandat 3308.247 kb on + strandat 3308.264 kb on + strandat 3308.272 kb on - strandat 3308.282 kb on - strandat 3308.317 kb on + strandat 3308.326 kb on + strandat 3308.370 kb on - strandat 3308.375 kb on - strandat 3308.393 kb on - strandat 3308.393 kb on - strandat 3308.393 kb on - strandat 3308.418 kb on + strandat 3308.430 kb on + strandat 3308.433 kb on - strandat 3308.438 kb on - strandat 3308.438 kb on - strandat 3308.453 kb on - strandat 3308.477 kb on - strandat 3308.545 kb on + strand, within dcrHat 3308.549 kb on + strand, within dcrHat 3308.608 kb on + strand, within dcrHat 3308.623 kb on + strand, within dcrHat 3308.651 kb on - strand, within dcrHat 3308.651 kb on - strand, within dcrHat 3308.652 kb on + strand, within dcrHat 3308.732 kb on + strand, within dcrHat 3308.733 kb on + strand, within dcrHat 3308.733 kb on + strand, within dcrHat 3308.740 kb on - strand, within dcrHat 3308.740 kb on - strand, within dcrHat 3308.747 kb on + strand, within dcrH

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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3,306,135 - DVU3152 0.73 -0.2
3,306,158 + DVU3152 0.75 -0.9
3,306,158 + DVU3152 0.75 +1.2
3,306,163 + DVU3152 0.75 -1.7
3,306,173 + DVU3152 0.76 +0.6
3,306,175 + DVU3152 0.76 -1.5
3,306,175 + DVU3152 0.76 -0.7
3,306,229 - DVU3152 0.79 -1.9
3,306,229 - DVU3152 0.79 -1.8
3,306,242 - DVU3152 0.80 +0.2
3,306,259 + DVU3152 0.81 -0.8
3,306,267 - DVU3152 0.81 -0.3
3,306,370 - DVU3152 0.87 +0.9
3,306,428 + +2.6
3,306,428 + -0.8
3,306,428 + +0.6
3,306,436 - -2.6
3,306,480 - +0.7
3,306,573 + -1.8
3,306,591 + +0.3
3,306,599 - +0.6
3,306,599 - -1.4
3,306,634 + +0.0
3,306,634 - -2.7
3,306,659 - +0.3
3,306,693 + -1.5
3,306,693 + -1.8
3,306,701 - +0.0
3,306,709 + -2.1
3,306,738 + -0.1
3,306,746 - +1.6
3,306,754 + -1.1
3,306,768 - +0.5
3,306,799 + +0.5
3,306,799 + +2.6
3,306,799 + -0.7
3,306,799 + -2.1
3,306,799 + -1.9
3,306,855 - -0.5
3,306,874 + +2.0
3,306,882 + -1.3
3,306,890 - +2.6
3,306,927 + +1.4
3,306,932 + -0.1
3,306,940 + -1.4
3,306,948 - -1.8
3,306,950 + -0.6
3,306,963 - +3.9
3,307,020 - -2.5
3,307,026 + -2.6
3,307,053 - DVU3153 0.32 -2.3
3,307,058 - DVU3153 0.36 -1.6
3,307,083 + DVU3153 0.57 -0.6
3,307,096 + DVU3153 0.68 +1.0
3,307,124 - -3.9
3,307,124 - -1.6
3,307,127 + -1.3
3,307,135 - -1.2
3,307,758 - +0.1
3,307,758 - +0.2
3,307,785 - +1.5
3,307,854 - -0.5
3,307,887 - +0.7
3,307,998 + +1.6
3,308,018 + -0.4
3,308,045 - +0.3
3,308,045 - +1.0
3,308,045 - +1.1
3,308,045 - -1.2
3,308,057 + +2.4
3,308,071 - +0.1
3,308,106 + +1.0
3,308,117 + -1.1
3,308,117 + -1.0
3,308,117 + -2.7
3,308,117 + +0.8
3,308,125 - -2.4
3,308,125 - -0.2
3,308,125 - -1.2
3,308,125 - -0.6
3,308,130 + -2.1
3,308,179 + +1.6
3,308,192 - -2.4
3,308,211 - -2.4
3,308,247 + -0.8
3,308,264 + -2.0
3,308,272 - -0.1
3,308,282 - +0.0
3,308,317 + -1.1
3,308,326 + -0.1
3,308,370 - -0.8
3,308,375 - -0.9
3,308,393 - +1.6
3,308,393 - -0.3
3,308,393 - -1.1
3,308,418 + +0.8
3,308,430 + +0.8
3,308,433 - +1.0
3,308,438 - -1.7
3,308,438 - +0.0
3,308,453 - -1.4
3,308,477 - -0.7
3,308,545 + dcrH DVU3155 0.11 -0.6
3,308,549 + dcrH DVU3155 0.11 +0.8
3,308,608 + dcrH DVU3155 0.13 +0.5
3,308,623 + dcrH DVU3155 0.14 -1.2
3,308,651 - dcrH DVU3155 0.15 -3.9
3,308,651 - dcrH DVU3155 0.15 -0.7
3,308,652 + dcrH DVU3155 0.15 -1.1
3,308,732 + dcrH DVU3155 0.17 +1.6
3,308,733 + dcrH DVU3155 0.17 -0.8
3,308,733 + dcrH DVU3155 0.17 +0.8
3,308,740 - dcrH DVU3155 0.18 +0.1
3,308,740 - dcrH DVU3155 0.18 -3.7
3,308,747 + dcrH DVU3155 0.18 +0.9

Or see this region's nucleotide sequence