Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3029

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3028 and pta are separated by 123 nucleotidespta and ackA are separated by 25 nucleotides DVU3028: DVU3028 - iron-sulfur cluster-binding protein (TIGR), at 3,150,824 to 3,152,092 DVU3028 DVU3029: pta - phosphate acetyltransferase (TIGR), at 3,152,216 to 3,154,330 pta DVU3030: ackA - acetate kinase (TIGR), at 3,154,356 to 3,155,564 ackA Position (kb) 3152 3153 3154 3155Strain fitness (log2 ratio) -2 -1 0 1 2at 3151.217 kb on - strand, within DVU3028at 3151.217 kb on - strand, within DVU3028at 3151.240 kb on - strand, within DVU3028at 3151.350 kb on + strand, within DVU3028at 3151.424 kb on + strand, within DVU3028at 3151.555 kb on + strand, within DVU3028at 3151.582 kb on + strand, within DVU3028at 3151.656 kb on + strand, within DVU3028at 3151.670 kb on + strand, within DVU3028at 3151.681 kb on + strand, within DVU3028at 3151.725 kb on - strand, within DVU3028at 3151.761 kb on - strand, within DVU3028at 3151.911 kb on + strand, within DVU3028at 3151.954 kb on - strand, within DVU3028at 3152.088 kb on + strandat 3152.096 kb on - strandat 3152.142 kb on - strandat 3154.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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3,151,217 - DVU3028 0.31 -1.2
3,151,217 - DVU3028 0.31 +0.0
3,151,240 - DVU3028 0.33 -1.5
3,151,350 + DVU3028 0.41 +0.8
3,151,424 + DVU3028 0.47 +0.2
3,151,555 + DVU3028 0.58 +1.3
3,151,582 + DVU3028 0.60 +0.6
3,151,656 + DVU3028 0.66 -0.6
3,151,670 + DVU3028 0.67 +2.6
3,151,681 + DVU3028 0.68 -1.8
3,151,725 - DVU3028 0.71 -0.6
3,151,761 - DVU3028 0.74 +2.6
3,151,911 + DVU3028 0.86 -0.1
3,151,954 - DVU3028 0.89 +1.6
3,152,088 + +2.2
3,152,096 - -1.2
3,152,142 - -0.9
3,154,332 - -1.6

Or see this region's nucleotide sequence