Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3028

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglcD and DVU3028 are separated by 31 nucleotidesDVU3028 and pta are separated by 123 nucleotides DVU3027: glcD - glycolate oxidase, subunit GlcD (TIGR), at 3,149,407 to 3,150,792 glcD DVU3028: DVU3028 - iron-sulfur cluster-binding protein (TIGR), at 3,150,824 to 3,152,092 DVU3028 DVU3029: pta - phosphate acetyltransferase (TIGR), at 3,152,216 to 3,154,330 pta Position (kb) 3150 3151 3152 3153Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3150.028 kb on + strand, within glcDat 3150.047 kb on - strand, within glcDat 3150.364 kb on - strand, within glcDat 3150.413 kb on + strand, within glcDat 3150.516 kb on - strand, within glcDat 3150.661 kb on + strandat 3150.678 kb on + strandat 3150.686 kb on - strandat 3150.882 kb on - strandat 3150.905 kb on + strandat 3151.096 kb on + strand, within DVU3028at 3151.152 kb on + strand, within DVU3028at 3151.152 kb on + strand, within DVU3028at 3151.152 kb on + strand, within DVU3028at 3151.160 kb on - strand, within DVU3028at 3151.170 kb on - strand, within DVU3028at 3151.217 kb on - strand, within DVU3028at 3151.217 kb on - strand, within DVU3028at 3151.240 kb on - strand, within DVU3028at 3151.350 kb on + strand, within DVU3028at 3151.424 kb on + strand, within DVU3028at 3151.555 kb on + strand, within DVU3028at 3151.582 kb on + strand, within DVU3028at 3151.656 kb on + strand, within DVU3028at 3151.670 kb on + strand, within DVU3028at 3151.681 kb on + strand, within DVU3028at 3151.725 kb on - strand, within DVU3028at 3151.761 kb on - strand, within DVU3028at 3151.911 kb on + strand, within DVU3028at 3151.954 kb on - strand, within DVU3028at 3152.088 kb on + strandat 3152.096 kb on - strandat 3152.142 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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3,150,028 + glcD DVU3027 0.45 -0.8
3,150,047 - glcD DVU3027 0.46 +1.0
3,150,364 - glcD DVU3027 0.69 +1.6
3,150,413 + glcD DVU3027 0.73 -1.4
3,150,516 - glcD DVU3027 0.80 +0.6
3,150,661 + -1.6
3,150,678 + +0.8
3,150,686 - +0.5
3,150,882 - -3.4
3,150,905 + +1.0
3,151,096 + DVU3028 0.21 -2.3
3,151,152 + DVU3028 0.26 -2.1
3,151,152 + DVU3028 0.26 -1.3
3,151,152 + DVU3028 0.26 -1.0
3,151,160 - DVU3028 0.26 -1.9
3,151,170 - DVU3028 0.27 -0.5
3,151,217 - DVU3028 0.31 -1.2
3,151,217 - DVU3028 0.31 +0.0
3,151,240 - DVU3028 0.33 -1.5
3,151,350 + DVU3028 0.41 +0.8
3,151,424 + DVU3028 0.47 +0.2
3,151,555 + DVU3028 0.58 +1.3
3,151,582 + DVU3028 0.60 +0.6
3,151,656 + DVU3028 0.66 -0.6
3,151,670 + DVU3028 0.67 +2.6
3,151,681 + DVU3028 0.68 -1.8
3,151,725 - DVU3028 0.71 -0.6
3,151,761 - DVU3028 0.74 +2.6
3,151,911 + DVU3028 0.86 -0.1
3,151,954 - DVU3028 0.89 +1.6
3,152,088 + +2.2
3,152,096 - -1.2
3,152,142 - -0.9

Or see this region's nucleotide sequence