Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glcD and DVU3028 are separated by 31 nucleotides DVU3028 and pta are separated by 123 nucleotides
DVU3027: glcD - glycolate oxidase, subunit GlcD (TIGR), at 3,149,407 to 3,150,792
glcD
DVU3028: DVU3028 - iron-sulfur cluster-binding protein (TIGR), at 3,150,824 to 3,152,092
DVU3028
DVU3029: pta - phosphate acetyltransferase (TIGR), at 3,152,216 to 3,154,330
pta
Position (kb)
3150
3151
3152
3153 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3150.028 kb on + strand, within glcD at 3150.047 kb on - strand, within glcD at 3150.364 kb on - strand, within glcD at 3150.413 kb on + strand, within glcD at 3150.516 kb on - strand, within glcD at 3150.661 kb on + strand at 3150.678 kb on + strand at 3150.686 kb on - strand at 3150.882 kb on - strand at 3150.905 kb on + strand at 3151.096 kb on + strand, within DVU3028 at 3151.152 kb on + strand, within DVU3028 at 3151.152 kb on + strand, within DVU3028 at 3151.152 kb on + strand, within DVU3028 at 3151.160 kb on - strand, within DVU3028 at 3151.170 kb on - strand, within DVU3028 at 3151.217 kb on - strand, within DVU3028 at 3151.217 kb on - strand, within DVU3028 at 3151.240 kb on - strand, within DVU3028 at 3151.350 kb on + strand, within DVU3028 at 3151.424 kb on + strand, within DVU3028 at 3151.555 kb on + strand, within DVU3028 at 3151.582 kb on + strand, within DVU3028 at 3151.656 kb on + strand, within DVU3028 at 3151.670 kb on + strand, within DVU3028 at 3151.681 kb on + strand, within DVU3028 at 3151.725 kb on - strand, within DVU3028 at 3151.761 kb on - strand, within DVU3028 at 3151.911 kb on + strand, within DVU3028 at 3151.954 kb on - strand, within DVU3028 at 3152.088 kb on + strand at 3152.096 kb on - strand at 3152.142 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM remove 3,150,028 + glcD DVU3027 0.45 -0.8 3,150,047 - glcD DVU3027 0.46 +1.0 3,150,364 - glcD DVU3027 0.69 +1.6 3,150,413 + glcD DVU3027 0.73 -1.4 3,150,516 - glcD DVU3027 0.80 +0.6 3,150,661 + -1.6 3,150,678 + +0.8 3,150,686 - +0.5 3,150,882 - -3.4 3,150,905 + +1.0 3,151,096 + DVU3028 0.21 -2.3 3,151,152 + DVU3028 0.26 -2.1 3,151,152 + DVU3028 0.26 -1.3 3,151,152 + DVU3028 0.26 -1.0 3,151,160 - DVU3028 0.26 -1.9 3,151,170 - DVU3028 0.27 -0.5 3,151,217 - DVU3028 0.31 -1.2 3,151,217 - DVU3028 0.31 +0.0 3,151,240 - DVU3028 0.33 -1.5 3,151,350 + DVU3028 0.41 +0.8 3,151,424 + DVU3028 0.47 +0.2 3,151,555 + DVU3028 0.58 +1.3 3,151,582 + DVU3028 0.60 +0.6 3,151,656 + DVU3028 0.66 -0.6 3,151,670 + DVU3028 0.67 +2.6 3,151,681 + DVU3028 0.68 -1.8 3,151,725 - DVU3028 0.71 -0.6 3,151,761 - DVU3028 0.74 +2.6 3,151,911 + DVU3028 0.86 -0.1 3,151,954 - DVU3028 0.89 +1.6 3,152,088 + +2.2 3,152,096 - -1.2 3,152,142 - -0.9
Or see this region's nucleotide sequence