Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3025

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatoC and DVU3024 are separated by 257 nucleotidesDVU3024 and por overlap by 16 nucleotidespor and DVU3026 are separated by 105 nucleotides DVU3023: atoC - sigma-54 dependent DNA-binding response regulator (TIGR), at 3,141,933 to 3,143,357 atoC DVU3024: DVU3024 - hypothetical protein (TIGR), at 3,143,615 to 3,143,782 DVU3024 DVU3025: por - pyruvate-ferredoxin oxidoreductase (TIGR), at 3,143,767 to 3,147,414 por DVU3026: DVU3026 - L-lactate permease family protein (TIGR), at 3,147,520 to 3,149,232 DVU3026 Position (kb) 3143 3144 3145 3146 3147 3148Strain fitness (log2 ratio) -2 -1 0 1 2at 3143.183 kb on + strand, within atoCat 3143.351 kb on + strandat 3143.500 kb on + strandat 3143.508 kb on - strandat 3143.664 kb on + strand, within DVU3024at 3143.664 kb on + strand, within DVU3024at 3143.740 kb on + strand, within DVU3024at 3147.460 kb on - strandat 3147.499 kb on + strandat 3147.514 kb on + strandat 3147.621 kb on + strandat 3148.000 kb on + strand, within DVU3026at 3148.272 kb on + strand, within DVU3026at 3148.306 kb on + strand, within DVU3026at 3148.387 kb on - strand, within DVU3026

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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3,143,183 + atoC DVU3023 0.88 -1.3
3,143,351 + +0.4
3,143,500 + +0.0
3,143,508 - -0.1
3,143,664 + DVU3024 0.29 +0.6
3,143,664 + DVU3024 0.29 +2.0
3,143,740 + DVU3024 0.74 +0.5
3,147,460 - -0.6
3,147,499 + -0.1
3,147,514 + +1.6
3,147,621 + -0.3
3,148,000 + DVU3026 0.28 -0.8
3,148,272 + DVU3026 0.44 -1.9
3,148,306 + DVU3026 0.46 -1.3
3,148,387 - DVU3026 0.51 +2.0

Or see this region's nucleotide sequence