Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2812

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2810 and DVU2811 are separated by 73 nucleotidesDVU2811 and fdnG-3 are separated by 51 nucleotidesfdnG-3 and DVU2815 are separated by 792 nucleotides DVU2810: DVU2810 - formate dehydrogenase formation protein FdhE, putative (TIGR), at 2,912,822 to 2,913,769 DVU2810 DVU2811: DVU2811 - formate dehydrogenase, beta subunit, putative (TIGR), at 2,913,843 to 2,914,502 DVU2811 DVU2812: fdnG-3 - formate dehydrogenase, alpha subunit, selenocysteine-containing (TIGR), at 2,914,554 to 2,917,592 fdnG-3 DVU2815: DVU2815 - outer membrane efflux protein (TIGR), at 2,918,385 to 2,919,995 DVU2815 Position (kb) 2914 2915 2916 2917 2918Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2913.558 kb on + strand, within DVU2810at 2913.611 kb on + strand, within DVU2810at 2913.611 kb on + strand, within DVU2810at 2913.619 kb on - strand, within DVU2810at 2913.619 kb on - strand, within DVU2810at 2913.619 kb on - strand, within DVU2810at 2913.633 kb on + strand, within DVU2810at 2913.643 kb on + strand, within DVU2810at 2913.659 kb on - strand, within DVU2810at 2913.685 kb on - strandat 2913.799 kb on - strandat 2913.909 kb on - strand, within DVU2811at 2914.130 kb on - strand, within DVU2811at 2914.147 kb on + strand, within DVU2811at 2914.155 kb on - strand, within DVU2811at 2914.294 kb on - strand, within DVU2811at 2914.365 kb on + strand, within DVU2811at 2914.552 kb on + strandat 2914.646 kb on + strandat 2914.695 kb on + strandat 2914.731 kb on - strandat 2914.736 kb on - strandat 2914.757 kb on - strandat 2914.844 kb on + strandat 2914.937 kb on + strand, within fdnG-3at 2915.031 kb on - strand, within fdnG-3at 2915.124 kb on - strand, within fdnG-3at 2915.124 kb on - strand, within fdnG-3at 2915.124 kb on - strand, within fdnG-3at 2915.197 kb on - strand, within fdnG-3at 2915.292 kb on + strand, within fdnG-3at 2915.292 kb on + strand, within fdnG-3at 2915.298 kb on - strand, within fdnG-3at 2915.300 kb on - strand, within fdnG-3at 2915.322 kb on + strand, within fdnG-3at 2915.353 kb on - strand, within fdnG-3at 2915.388 kb on - strand, within fdnG-3at 2915.434 kb on - strand, within fdnG-3at 2915.444 kb on - strand, within fdnG-3at 2915.457 kb on - strand, within fdnG-3at 2915.519 kb on + strand, within fdnG-3at 2915.617 kb on + strand, within fdnG-3at 2915.629 kb on + strand, within fdnG-3at 2915.629 kb on + strand, within fdnG-3at 2915.629 kb on + strand, within fdnG-3at 2915.629 kb on + strand, within fdnG-3at 2915.629 kb on + strand, within fdnG-3at 2915.630 kb on - strand, within fdnG-3at 2915.637 kb on - strand, within fdnG-3at 2915.637 kb on - strand, within fdnG-3at 2915.637 kb on - strand, within fdnG-3at 2915.637 kb on - strand, within fdnG-3at 2915.637 kb on - strand, within fdnG-3at 2915.639 kb on - strand, within fdnG-3at 2915.650 kb on - strand, within fdnG-3at 2915.749 kb on + strand, within fdnG-3at 2915.790 kb on + strand, within fdnG-3at 2915.800 kb on - strand, within fdnG-3at 2915.856 kb on + strand, within fdnG-3at 2915.866 kb on + strand, within fdnG-3at 2915.869 kb on - strand, within fdnG-3at 2915.870 kb on + strand, within fdnG-3at 2915.959 kb on + strand, within fdnG-3at 2916.000 kb on - strand, within fdnG-3at 2916.038 kb on - strand, within fdnG-3at 2916.073 kb on + strand, within fdnG-3at 2916.112 kb on + strand, within fdnG-3at 2916.138 kb on + strand, within fdnG-3at 2916.154 kb on - strand, within fdnG-3at 2916.227 kb on + strand, within fdnG-3at 2916.227 kb on - strand, within fdnG-3at 2916.232 kb on + strand, within fdnG-3at 2916.234 kb on + strand, within fdnG-3at 2916.258 kb on + strand, within fdnG-3at 2916.268 kb on - strand, within fdnG-3at 2916.370 kb on - strand, within fdnG-3at 2916.538 kb on - strand, within fdnG-3at 2916.564 kb on + strand, within fdnG-3at 2916.572 kb on - strand, within fdnG-3at 2916.588 kb on - strand, within fdnG-3at 2916.622 kb on + strand, within fdnG-3at 2916.726 kb on + strand, within fdnG-3at 2916.732 kb on - strand, within fdnG-3at 2916.901 kb on + strand, within fdnG-3at 2916.980 kb on - strand, within fdnG-3at 2917.015 kb on + strand, within fdnG-3at 2917.023 kb on + strand, within fdnG-3at 2917.029 kb on + strand, within fdnG-3at 2917.067 kb on - strand, within fdnG-3at 2917.144 kb on - strand, within fdnG-3at 2917.159 kb on + strand, within fdnG-3at 2917.224 kb on - strand, within fdnG-3at 2917.236 kb on - strand, within fdnG-3at 2917.295 kb on - strandat 2917.389 kb on - strandat 2917.432 kb on + strandat 2917.489 kb on + strandat 2917.497 kb on - strandat 2917.497 kb on - strandat 2917.524 kb on - strandat 2917.534 kb on - strandat 2917.602 kb on - strandat 2917.725 kb on - strandat 2917.811 kb on + strandat 2917.823 kb on + strandat 2918.014 kb on + strandat 2918.156 kb on - strandat 2918.260 kb on + strandat 2918.268 kb on - strandat 2918.298 kb on - strandat 2918.410 kb on - strandat 2918.425 kb on - strandat 2918.426 kb on + strandat 2918.462 kb on - strandat 2918.462 kb on - strandat 2918.512 kb on + strandat 2918.520 kb on - strandat 2918.520 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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2,913,558 + DVU2810 0.78 -1.1
2,913,611 + DVU2810 0.83 -0.6
2,913,611 + DVU2810 0.83 +1.7
2,913,619 - DVU2810 0.84 -2.1
2,913,619 - DVU2810 0.84 +1.3
2,913,619 - DVU2810 0.84 -1.0
2,913,633 + DVU2810 0.86 -0.9
2,913,643 + DVU2810 0.87 -1.3
2,913,659 - DVU2810 0.88 +0.5
2,913,685 - -1.1
2,913,799 - -1.4
2,913,909 - DVU2811 0.10 -0.0
2,914,130 - DVU2811 0.43 -0.4
2,914,147 + DVU2811 0.46 -1.8
2,914,155 - DVU2811 0.47 -0.1
2,914,294 - DVU2811 0.68 -2.1
2,914,365 + DVU2811 0.79 -1.4
2,914,552 + -1.0
2,914,646 + -2.0
2,914,695 + -1.7
2,914,731 - +0.7
2,914,736 - -2.0
2,914,757 - -1.7
2,914,844 + +2.1
2,914,937 + fdnG-3 DVU2812 0.13 -2.6
2,915,031 - fdnG-3 DVU2812 0.16 -1.4
2,915,124 - fdnG-3 DVU2812 0.19 -0.2
2,915,124 - fdnG-3 DVU2812 0.19 -0.0
2,915,124 - fdnG-3 DVU2812 0.19 -0.7
2,915,197 - fdnG-3 DVU2812 0.21 -1.5
2,915,292 + fdnG-3 DVU2812 0.24 +0.4
2,915,292 + fdnG-3 DVU2812 0.24 -1.0
2,915,298 - fdnG-3 DVU2812 0.24 -1.6
2,915,300 - fdnG-3 DVU2812 0.25 -0.6
2,915,322 + fdnG-3 DVU2812 0.25 -3.5
2,915,353 - fdnG-3 DVU2812 0.26 +3.7
2,915,388 - fdnG-3 DVU2812 0.27 +0.4
2,915,434 - fdnG-3 DVU2812 0.29 -0.0
2,915,444 - fdnG-3 DVU2812 0.29 -0.3
2,915,457 - fdnG-3 DVU2812 0.30 -0.8
2,915,519 + fdnG-3 DVU2812 0.32 +1.4
2,915,617 + fdnG-3 DVU2812 0.35 +3.7
2,915,629 + fdnG-3 DVU2812 0.35 +2.7
2,915,629 + fdnG-3 DVU2812 0.35 +1.3
2,915,629 + fdnG-3 DVU2812 0.35 -0.7
2,915,629 + fdnG-3 DVU2812 0.35 -0.5
2,915,629 + fdnG-3 DVU2812 0.35 +0.8
2,915,630 - fdnG-3 DVU2812 0.35 +1.4
2,915,637 - fdnG-3 DVU2812 0.36 -1.1
2,915,637 - fdnG-3 DVU2812 0.36 -0.3
2,915,637 - fdnG-3 DVU2812 0.36 +0.2
2,915,637 - fdnG-3 DVU2812 0.36 -0.0
2,915,637 - fdnG-3 DVU2812 0.36 -2.2
2,915,639 - fdnG-3 DVU2812 0.36 +0.1
2,915,650 - fdnG-3 DVU2812 0.36 +0.0
2,915,749 + fdnG-3 DVU2812 0.39 +0.6
2,915,790 + fdnG-3 DVU2812 0.41 +2.1
2,915,800 - fdnG-3 DVU2812 0.41 -0.1
2,915,856 + fdnG-3 DVU2812 0.43 -1.3
2,915,866 + fdnG-3 DVU2812 0.43 -0.6
2,915,869 - fdnG-3 DVU2812 0.43 -0.8
2,915,870 + fdnG-3 DVU2812 0.43 -3.3
2,915,959 + fdnG-3 DVU2812 0.46 +1.5
2,916,000 - fdnG-3 DVU2812 0.48 -0.3
2,916,038 - fdnG-3 DVU2812 0.49 +1.2
2,916,073 + fdnG-3 DVU2812 0.50 +0.2
2,916,112 + fdnG-3 DVU2812 0.51 -3.5
2,916,138 + fdnG-3 DVU2812 0.52 -1.1
2,916,154 - fdnG-3 DVU2812 0.53 -0.7
2,916,227 + fdnG-3 DVU2812 0.55 +1.4
2,916,227 - fdnG-3 DVU2812 0.55 -1.9
2,916,232 + fdnG-3 DVU2812 0.55 -0.1
2,916,234 + fdnG-3 DVU2812 0.55 -0.7
2,916,258 + fdnG-3 DVU2812 0.56 -2.4
2,916,268 - fdnG-3 DVU2812 0.56 -0.8
2,916,370 - fdnG-3 DVU2812 0.60 -0.8
2,916,538 - fdnG-3 DVU2812 0.65 -1.2
2,916,564 + fdnG-3 DVU2812 0.66 -0.1
2,916,572 - fdnG-3 DVU2812 0.66 -1.9
2,916,588 - fdnG-3 DVU2812 0.67 +0.7
2,916,622 + fdnG-3 DVU2812 0.68 -1.2
2,916,726 + fdnG-3 DVU2812 0.71 -0.3
2,916,732 - fdnG-3 DVU2812 0.72 -1.3
2,916,901 + fdnG-3 DVU2812 0.77 -2.1
2,916,980 - fdnG-3 DVU2812 0.80 +0.5
2,917,015 + fdnG-3 DVU2812 0.81 +2.1
2,917,023 + fdnG-3 DVU2812 0.81 -1.0
2,917,029 + fdnG-3 DVU2812 0.81 -0.1
2,917,067 - fdnG-3 DVU2812 0.83 -0.3
2,917,144 - fdnG-3 DVU2812 0.85 +1.4
2,917,159 + fdnG-3 DVU2812 0.86 +0.4
2,917,224 - fdnG-3 DVU2812 0.88 +1.8
2,917,236 - fdnG-3 DVU2812 0.88 +0.2
2,917,295 - +1.1
2,917,389 - -0.0
2,917,432 + -0.9
2,917,489 + -0.4
2,917,497 - +2.1
2,917,497 - -0.4
2,917,524 - -0.0
2,917,534 - -1.6
2,917,602 - -0.7
2,917,725 - +1.5
2,917,811 + -0.9
2,917,823 + -0.6
2,918,014 + -1.1
2,918,156 - -0.3
2,918,260 + -0.0
2,918,268 - -1.9
2,918,298 - -1.1
2,918,410 - +0.7
2,918,425 - -1.8
2,918,426 + -0.1
2,918,462 - -1.8
2,918,462 - -1.3
2,918,512 + +0.2
2,918,520 - -1.3
2,918,520 - +3.4

Or see this region's nucleotide sequence