Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2811

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2810 and DVU2811 are separated by 73 nucleotidesDVU2811 and fdnG-3 are separated by 51 nucleotides DVU2810: DVU2810 - formate dehydrogenase formation protein FdhE, putative (TIGR), at 2,912,822 to 2,913,769 DVU2810 DVU2811: DVU2811 - formate dehydrogenase, beta subunit, putative (TIGR), at 2,913,843 to 2,914,502 DVU2811 DVU2812: fdnG-3 - formate dehydrogenase, alpha subunit, selenocysteine-containing (TIGR), at 2,914,554 to 2,917,592 fdnG-3 Position (kb) 2913 2914 2915Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2912.852 kb on - strandat 2912.877 kb on + strandat 2912.902 kb on + strandat 2912.912 kb on + strandat 2912.917 kb on + strand, within DVU2810at 2912.925 kb on - strand, within DVU2810at 2912.944 kb on + strand, within DVU2810at 2912.944 kb on + strand, within DVU2810at 2912.982 kb on - strand, within DVU2810at 2912.982 kb on - strand, within DVU2810at 2913.080 kb on + strand, within DVU2810at 2913.080 kb on + strand, within DVU2810at 2913.102 kb on + strand, within DVU2810at 2913.168 kb on - strand, within DVU2810at 2913.292 kb on + strand, within DVU2810at 2913.350 kb on + strand, within DVU2810at 2913.358 kb on - strand, within DVU2810at 2913.514 kb on - strand, within DVU2810at 2913.530 kb on - strand, within DVU2810at 2913.553 kb on - strand, within DVU2810at 2913.558 kb on + strand, within DVU2810at 2913.611 kb on + strand, within DVU2810at 2913.611 kb on + strand, within DVU2810at 2913.619 kb on - strand, within DVU2810at 2913.619 kb on - strand, within DVU2810at 2913.619 kb on - strand, within DVU2810at 2913.633 kb on + strand, within DVU2810at 2913.643 kb on + strand, within DVU2810at 2913.659 kb on - strand, within DVU2810at 2913.685 kb on - strandat 2913.799 kb on - strandat 2913.909 kb on - strand, within DVU2811at 2914.130 kb on - strand, within DVU2811at 2914.147 kb on + strand, within DVU2811at 2914.155 kb on - strand, within DVU2811at 2914.294 kb on - strand, within DVU2811at 2914.365 kb on + strand, within DVU2811at 2914.552 kb on + strandat 2914.646 kb on + strandat 2914.695 kb on + strandat 2914.731 kb on - strandat 2914.736 kb on - strandat 2914.757 kb on - strandat 2914.844 kb on + strandat 2914.937 kb on + strand, within fdnG-3at 2915.031 kb on - strand, within fdnG-3at 2915.124 kb on - strand, within fdnG-3at 2915.124 kb on - strand, within fdnG-3at 2915.124 kb on - strand, within fdnG-3at 2915.197 kb on - strand, within fdnG-3at 2915.292 kb on + strand, within fdnG-3at 2915.292 kb on + strand, within fdnG-3at 2915.298 kb on - strand, within fdnG-3at 2915.300 kb on - strand, within fdnG-3at 2915.322 kb on + strand, within fdnG-3at 2915.353 kb on - strand, within fdnG-3at 2915.388 kb on - strand, within fdnG-3at 2915.434 kb on - strand, within fdnG-3at 2915.444 kb on - strand, within fdnG-3at 2915.457 kb on - strand, within fdnG-3

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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2,912,852 - -0.6
2,912,877 + -0.8
2,912,902 + +0.4
2,912,912 + -0.7
2,912,917 + DVU2810 0.10 -1.9
2,912,925 - DVU2810 0.11 -1.0
2,912,944 + DVU2810 0.13 -2.6
2,912,944 + DVU2810 0.13 +1.1
2,912,982 - DVU2810 0.17 +1.2
2,912,982 - DVU2810 0.17 +1.5
2,913,080 + DVU2810 0.27 -1.1
2,913,080 + DVU2810 0.27 -1.6
2,913,102 + DVU2810 0.30 -2.5
2,913,168 - DVU2810 0.36 -0.4
2,913,292 + DVU2810 0.50 +0.2
2,913,350 + DVU2810 0.56 -1.1
2,913,358 - DVU2810 0.57 +0.7
2,913,514 - DVU2810 0.73 -0.6
2,913,530 - DVU2810 0.75 +1.1
2,913,553 - DVU2810 0.77 +2.7
2,913,558 + DVU2810 0.78 -1.1
2,913,611 + DVU2810 0.83 -0.6
2,913,611 + DVU2810 0.83 +1.7
2,913,619 - DVU2810 0.84 -2.1
2,913,619 - DVU2810 0.84 +1.3
2,913,619 - DVU2810 0.84 -1.0
2,913,633 + DVU2810 0.86 -0.9
2,913,643 + DVU2810 0.87 -1.3
2,913,659 - DVU2810 0.88 +0.5
2,913,685 - -1.1
2,913,799 - -1.4
2,913,909 - DVU2811 0.10 -0.0
2,914,130 - DVU2811 0.43 -0.4
2,914,147 + DVU2811 0.46 -1.8
2,914,155 - DVU2811 0.47 -0.1
2,914,294 - DVU2811 0.68 -2.1
2,914,365 + DVU2811 0.79 -1.4
2,914,552 + -1.0
2,914,646 + -2.0
2,914,695 + -1.7
2,914,731 - +0.7
2,914,736 - -2.0
2,914,757 - -1.7
2,914,844 + +2.1
2,914,937 + fdnG-3 DVU2812 0.13 -2.6
2,915,031 - fdnG-3 DVU2812 0.16 -1.4
2,915,124 - fdnG-3 DVU2812 0.19 -0.2
2,915,124 - fdnG-3 DVU2812 0.19 -0.0
2,915,124 - fdnG-3 DVU2812 0.19 -0.7
2,915,197 - fdnG-3 DVU2812 0.21 -1.5
2,915,292 + fdnG-3 DVU2812 0.24 +0.4
2,915,292 + fdnG-3 DVU2812 0.24 -1.0
2,915,298 - fdnG-3 DVU2812 0.24 -1.6
2,915,300 - fdnG-3 DVU2812 0.25 -0.6
2,915,322 + fdnG-3 DVU2812 0.25 -3.5
2,915,353 - fdnG-3 DVU2812 0.26 +3.7
2,915,388 - fdnG-3 DVU2812 0.27 +0.4
2,915,434 - fdnG-3 DVU2812 0.29 -0.0
2,915,444 - fdnG-3 DVU2812 0.29 -0.3
2,915,457 - fdnG-3 DVU2812 0.30 -0.8

Or see this region's nucleotide sequence