Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2348

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargD and dut are separated by 204 nucleotidesdut and DVU2349 are separated by 182 nucleotides DVU2347: argD - acetylornithine aminotransferase (TIGR), at 2,440,531 to 2,441,730 argD DVU2348: dut - deoxyuridine 5-triphosphate nucleotidohydrolase (TIGR), at 2,441,935 to 2,442,447 dut DVU2349: DVU2349 - carbohydrate phosphorylase family protein (TIGR), at 2,442,630 to 2,445,197 DVU2349 Position (kb) 2441 2442 2443Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2441.000 kb on + strand, within argDat 2441.008 kb on - strand, within argDat 2441.015 kb on + strand, within argDat 2441.015 kb on + strand, within argDat 2441.023 kb on - strand, within argDat 2441.035 kb on + strand, within argDat 2441.068 kb on - strand, within argDat 2441.092 kb on - strand, within argDat 2441.121 kb on - strand, within argDat 2441.138 kb on + strand, within argDat 2441.151 kb on - strand, within argDat 2441.153 kb on + strand, within argDat 2441.166 kb on - strand, within argDat 2441.288 kb on + strand, within argDat 2441.334 kb on + strand, within argDat 2441.448 kb on - strand, within argDat 2441.473 kb on + strand, within argDat 2441.487 kb on + strand, within argDat 2441.552 kb on + strand, within argDat 2441.560 kb on - strand, within argDat 2441.603 kb on - strand, within argDat 2441.636 kb on + strandat 2441.664 kb on - strandat 2441.701 kb on + strandat 2441.709 kb on - strandat 2441.733 kb on - strandat 2441.745 kb on - strandat 2441.791 kb on + strandat 2441.845 kb on + strandat 2441.911 kb on + strandat 2442.452 kb on - strandat 2442.480 kb on + strandat 2442.628 kb on + strandat 2442.645 kb on + strandat 2442.655 kb on - strandat 2442.665 kb on - strandat 2442.677 kb on + strandat 2442.685 kb on - strandat 2442.685 kb on - strandat 2442.731 kb on - strandat 2442.769 kb on + strandat 2442.810 kb on + strandat 2442.844 kb on - strandat 2442.859 kb on - strandat 2443.095 kb on + strand, within DVU2349at 2443.099 kb on + strand, within DVU2349at 2443.263 kb on + strand, within DVU2349at 2443.271 kb on - strand, within DVU2349at 2443.271 kb on - strand, within DVU2349at 2443.351 kb on - strand, within DVU2349

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 2mM
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2,441,000 + argD DVU2347 0.39 +0.2
2,441,008 - argD DVU2347 0.40 -0.5
2,441,015 + argD DVU2347 0.40 -0.6
2,441,015 + argD DVU2347 0.40 -2.6
2,441,023 - argD DVU2347 0.41 +0.6
2,441,035 + argD DVU2347 0.42 +0.5
2,441,068 - argD DVU2347 0.45 +1.2
2,441,092 - argD DVU2347 0.47 +1.0
2,441,121 - argD DVU2347 0.49 +1.0
2,441,138 + argD DVU2347 0.51 -0.4
2,441,151 - argD DVU2347 0.52 +0.1
2,441,153 + argD DVU2347 0.52 -1.9
2,441,166 - argD DVU2347 0.53 -1.0
2,441,288 + argD DVU2347 0.63 +1.1
2,441,334 + argD DVU2347 0.67 -0.4
2,441,448 - argD DVU2347 0.76 +0.1
2,441,473 + argD DVU2347 0.79 +1.8
2,441,487 + argD DVU2347 0.80 +0.8
2,441,552 + argD DVU2347 0.85 -1.4
2,441,560 - argD DVU2347 0.86 -0.5
2,441,603 - argD DVU2347 0.89 -1.0
2,441,636 + -1.7
2,441,664 - -1.6
2,441,701 + -0.2
2,441,709 - -0.9
2,441,733 - -1.6
2,441,745 - -0.6
2,441,791 + -1.8
2,441,845 + -0.0
2,441,911 + -0.4
2,442,452 - +0.8
2,442,480 + +1.2
2,442,628 + -0.5
2,442,645 + -1.0
2,442,655 - +1.0
2,442,665 - +1.0
2,442,677 + +0.3
2,442,685 - +1.0
2,442,685 - -0.9
2,442,731 - -1.8
2,442,769 + -0.6
2,442,810 + +0.1
2,442,844 - -2.1
2,442,859 - +0.8
2,443,095 + DVU2349 0.18 +2.8
2,443,099 + DVU2349 0.18 -1.1
2,443,263 + DVU2349 0.25 -0.4
2,443,271 - DVU2349 0.25 -0.8
2,443,271 - DVU2349 0.25 -0.5
2,443,351 - DVU2349 0.28 -0.2

Or see this region's nucleotide sequence